Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq12010 91.5 1e-13 seq22963 87.8 2e-12 >seq12010 Length=13650 Score = 91.5 bits (100), Expect = 1e-13 Identities = 274/418 (66%), Gaps = 9/418 (2%) Strand=Plus/Plus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| || |||||| || | || || || | |||||| ||||| || ||| || | Sbjct 5637 ACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTCATTGCTAAACGTAAG 5696 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 ||||||||||| || || || |||| ||||||||||||| ||||||||| || || Sbjct 5697 GCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAATGATCCGCTGAAAAA 5756 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 ||||||||| || ||| | || | ||||||| || | ||||| || | | Sbjct 5757 TATTCCCTCTACACACGCATAAGCAACCAATCGTTGAATGAAAGGTGCTTCCTTATCC-- 5814 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| | ||||||| | || | ||| | | || || || || || || Sbjct 5815 -ATCCACTGCAATGCCCATTTTGCCTTCTGTTTCACGCATTCAATCTCGTCCATCGCGTT 5873 Query 14443 AAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || || || | ||| ||||| || ||| | | ||||| || || | || || Sbjct 5874 GAACAAGTGCTGCTTTTCTTTGGCGTTCTTCACA--TATGTGTCTATCAACAACGAGTAT 5931 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 | ||| ||| | ||||||||| || ||||| ||||||| || | || || | | Sbjct 5932 GTCTCACTGTGAACGTTTTCCATTGCAGCTTGAAACGCATAAAAGCAGCGTGCCTCAGGC 5991 Query 14561 CATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 | || || || | | | |||| |||| | |||||||| || || ||||||||| Sbjct 5992 AACTGCACGTCATTAATGAAATTTTTC-GTTAAATTTTCCAATACAATGCCATCACTA 6048 >seq22963 Length=1357 Score = 87.8 bits (96), Expect = 2e-12 Identities = 280/426 (66%), Gaps = 25/426 (6%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||||||| ||| || || || | |||||| ||||| || ||| || | Sbjct 413 ACAAGCAAAATCAGTGTGAGATCCTTCGTCACGACTAATTAGTTCATTGATAAACGTAAG 354 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 ||||| ||||| | | || |||| ||||||||||||| ||||||| | || || Sbjct 353 GCCTGGAATCAAACAATGCTTCTTTAGCCAAAATATTGCACAAAATGATCAGCTGAAAAA 294 Query 14323 TATTCCCTCAACTGCA---GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 ||||| || ||||| ||| | || | ||||||| || | ||||| || || Sbjct 293 TATTC---CATCTGCACAGGCATAAGCAACCAATCGTTGAATGAAAGGTGCTTCATTATT 237 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 | ||||||| ||||||| | || | ||| | | || ||| || || || Sbjct 236 C---ATCCATTGCAATGCCCATTTTGCCTTCTGTTTCACGCATTCAATTTCGTCCATCGC 180 Query 14440 ATTAAATAAATGTTCCTTCTCTTT--AGTACTTGAA--ATGTATGTATCAATAAGTAAGC 14495 || || || || | ||| ||||| || ||| || |||| | |||||| || | Sbjct 179 GTTGAACAAGTGCTGCTTTTCTTTGGCGTTCTTCAAATATGTGTTTATCAACAACGA--- 123 Query 14496 TATACATTTCAGAGTGTATGTTTTCCAT---AGCTATCTGAAAACCATAAAAACATCTAG 14552 || | ||| || | ||||||||| |||| ||||| ||||||| ||||| | Sbjct 122 -GTATGTCTCACTTTGAACGTTTTCCATTGAAGCT---TGAAACGCATAAAAGCATCTTG 67 Query 14553 CTTCTGACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14611 | || | | |||| || || | | | |||| |||| | |||||||| || || | | Sbjct 66 CATCAGGCAATTGCACGTCATTAATGAAATTTTTC-GTTAAATTTTCCAATACAATGCAA 8 Query 14612 TCACTA 14617 |||||| Sbjct 7 TCACTA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482039256280120