Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq19824 95.1 9e-15 seq40838 93.3 3e-14 seq19166 93.3 3e-14 seq45910 89.7 4e-13 seq35091 87.8 1e-12 seq29189 86.0 5e-12 seq28421 86.0 5e-12 >seq19824 Length=8713 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 18134 TTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATA 18193 ||||||||| |||||||||||| || ||| | | ||| || ||||||||||| ||| | Sbjct 6368 TTCTTTTTGGATGTTGTAGTCGCTCAAAGTTCTTCCATCCTCTAATTGTTTGCCGGCAAA 6427 Query 18194 GATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTG 18253 ||| || | |||||| || || | |||||||| || |||| |||||| | Sbjct 6428 GATGAGACGTTGTTGCTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTGACATT 6487 Query 18254 TGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTAC 18313 | | ||||| ||| || || | || ||| |||| |||||||| ||||| || Sbjct 6488 TTGGATGGTGTCGTTGGGTTCCACGTCCAACGTAATGGTTTTTCCGGTCAAGGTTTTAAC 6547 Query 18314 AAAAATTTGCAT 18325 ||| |||||||| Sbjct 6548 AAAGATTTGCAT 6559 >seq40838 Length=12235 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 18134 TTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATA 18193 |||||||||||||||||| ||| | || || ||||||||||||||| || || | Sbjct 3783 TTCTTTTTGAATGTTGTAATCGCTTAAAGTGCGACCATCTTCCAATTGTTTTCCTGCGAA 3842 Query 18194 GATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTG 18253 ||| | | |||||| || || | |||||||| || ||||| | ||| || | Sbjct 3843 GATCAAGCGTTGTTGTTCAGGAGGGATTCCTTCCTTTTCTTGAATTTTTGCCTTAACGTT 3902 Query 18254 TGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTAC 18313 | | |||||| ||||||| || | || ||| ||||||||||||| || || || Sbjct 3903 TTGGATTGTGTCATTGGGCTCGACATCTAATGTAATGGTTTTGCCGGTCAAAGTCTTCAC 3962 Query 18314 AAAAATTTGCATTTTTAAA 18332 |||| | ||||||||| Sbjct 3963 AAAACT----ATTTTTAAA 3977 >seq19166 Length=5045 Score = 93.3 bits (102), Expect = 3e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 18134 TTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATA 18193 |||||||||||||||||||||| | ||| | | ||||||||||||||| || ||| | Sbjct 4786 TTCTTTTTGAATGTTGTAGTCGCTTAAAGTTCTTCCATCTTCCAATTGTTTTCCTGCAAA 4845 Query 18194 GATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTG 18253 || || | |||||| || ||| | |||||||| || |||| |||||| | Sbjct 4846 AATCAGGCGTTGTTGTTCAGGGGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTGACATT 4905 Query 18254 TGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTAC 18313 | | |||||| |||||| || | ||| ||| ||||||| ||||| || || || Sbjct 4906 TTGGATCGTGTCATTCGGCTCGACATCCAAGGTAATGGTTTTGCCTGTCAAAGTCTTCAC 4965 Query 18314 AAAA 18317 ||| Sbjct 4966 GAAA 4969 >seq45910 Length=1805 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 18134 TTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATA 18193 |||||||||||| ||||||||| | ||| | | ||||||||||||||| |||||| | Sbjct 633 TTCTTTTTGAATATTGTAGTCGCTTAAAGTTCTTCCATCTTCCAATTGTTTTCCCGCAAA 574 Query 18194 GATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTG 18253 || | | ||||| || ||| | ||||||||||| ||||| |||||| | Sbjct 573 AATCAAGCGCTGTTGTTCAGGGGGTATTCCTTCCTTATCTTGAATTTTCGCCTTGACATT 514 Query 18254 TGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTAC 18313 | | |||||| ||||||| || | ||| ||| |||| || || || || || || Sbjct 513 TTGGATCGTGTCATTGGGCTCGACATCTAAGGTAATGGTTTTACCAGTTAAAGTCTTCAC 454 Query 18314 AAAA 18317 ||| Sbjct 453 GAAA 450 >seq35091 Length=3122 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 18134 TTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATA 18193 |||||||||||||||||||||| | ||| | | |||||||||||||| || ||| | Sbjct 1254 TTCTTTTTGAATGTTGTAGTCGCTTAAAGTTCTTCCGTCTTCCAATTGTTTTCCTGCAAA 1195 Query 18194 GATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCT 18252 || | | |||||| || ||| | ||||||||||| ||||| |||| ||||| | Sbjct 1194 AATCAAGCGTTGTTGTTCAGGGGGGATTCCTTCCTTATCTTGAATTT-TTGCTTTGACAT 1136 Query 18253 GTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTA 18312 | | ||||| || || || | ||| ||| ||||||||||||| || || | Sbjct 1135 TTTGGATCGTGTCGTTGGCTTCAACATCTAAGGTAATGGTTTTGCCGGTCAAAGTCTTCA 1076 Query 18313 CAAAA 18317 | ||| Sbjct 1075 CGAAA 1071 >seq29189 Length=1803 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 18134 TTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATA 18193 ||||||||| ||||||||||| || || ||||||||| ||||| ||||| ||| | Sbjct 561 TTCTTTTTGGATGTTGTAGTCACTCAAGGTGCGACAATCTTCTAATTGCTTGCCTGCAAA 620 Query 18194 GATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCT 18252 ||| | || |||||| || || | |||||| ||||| ||||| | || || | | Sbjct 621 GATCAATCGTTGTTGTTCGGGAGGAATGCCTTCATTATCCTGAATTT-TGGCTTTCAAAT 679 Query 18253 GTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTA 18312 | | |||||| ||||| || | |||||| |||| |||||||| ||||| | Sbjct 680 TTTGGATGGTGTCATTAGGCTCCACATCCAACGTGATGGTTTTTCCGGTCAAAGTTTTGA 739 Query 18313 CAAA 18316 |||| Sbjct 740 CAAA 743 >seq28421 Length=944 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 18134 TTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATA 18193 |||||||||||||||||| || | || || ||||||||||||||| || || | Sbjct 27 TTCTTTTTGAATGTTGTAACCGCTTAAAGTGCGACCATCTTCCAATTGTTTTCCTGCGAA 86 Query 18194 GATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTG 18253 ||| | | |||||| || || | |||||||| || ||||| | ||| || | Sbjct 87 GATCAAGCGTTGTTGTTCAGGAGGGATTCCTTCCTTTTCTTGAATTTTTGCCTTAACGTT 146 Query 18254 TGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTAC 18313 | | |||||| ||||||| || | || ||| ||||||||||||| || || || Sbjct 147 TTGGATTGTGTCATTGGGCTCGACATCTAATGTAATGGTTTTGCCGGTCAAAGTCTTCAC 206 Query 18314 AAAAATTTGCATTTTTAAA 18332 |||| || |||||||| Sbjct 207 AAAA--TTATTTTTTTAAA 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379109097036705