Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq19824 102 7e-17 seq49792 100 2e-16 seq40838 100 2e-16 seq35091 96.9 3e-15 seq50756 95.1 1e-14 seq21059 95.1 1e-14 seq28421 93.3 4e-14 >seq19824 Length=8713 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||| || |||||||||||||| ||||| ||||| || || | || || ||| | | Sbjct 6560 CATGCAAATCTTTGTTAAAACCTTGACCGGAAAAACCATTACGTTGGACGTGGAACCCAA 6501 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | ||| ||| |||| ||||| | || ||||| | ||| ||| || Sbjct 6500 CGACACCATCCAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGAGCA 6441 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 |||||| | || | ||| ||||||||| | || ||| | ||| ||| ||| |||| Sbjct 6440 ACAACGTCTCATCTTTGCCGGCAAACAATTAGAGGATGGAAGAACTTTGAGCGACTACAA 6381 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| || ||||| || | ||||| || || || ||||| || ||| Sbjct 6380 CATCCAAAAAGAAAGTACCTTGCATTTGGTATTGCGTTTGCGTGGTGGT 6332 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || ||||| || || || || ||||| || || | || || ||| | | | Sbjct 6328 ATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACAATTACGTTGGACGTTGAACCCAAC 6269 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | | ||| || | |||||| | || ||||| | || || || Sbjct 6268 GACACCATCCAGAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGAGCAA 6209 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||||||||| | |||||| |||||| |||| ||| | ||| ||| || |||| | Sbjct 6208 CAACGTTTAATTTTTGCGGGAAAACAATTGGAGGATGGCCGCACTTTGAGTGACTACAAC 6149 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || || |||||| ||| | ||||| ||||| || ||| | ||||| Sbjct 6148 ATCCAAAAAGAGAGCACTTTGCATTTGGTGTTGCGTTTGAGAGGAGG 6102 >seq49792 Length=5355 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24841 TTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGCGACAGTGTA 24900 || || || || || ||||||||||| || ||| | |||||||| | | ||||| | Sbjct 845 TTCGTGAAGACTTTGACCGGCAAAACTATTACCTTAGATGTCGAGCCCAACGACACGATC 904 Query 24901 GAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAGCAACGTTTA 24960 ||| || |||| |||||| | || ||||| | || ||| || ||||| || Sbjct 905 CAAAACGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCTCCTGAACAACAACGCTTG 964 Query 24961 ATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGCATACAGAAA 25020 || | ||| || |||||| | |||||| | ||| | | ||| |||| ||| || ||| Sbjct 965 ATTTTTGCAGGAAAACAATTAGAAGATGGCCGCACTTTAAGCGACTACAACATTCAAAAA 1024 Query 25021 GAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || |||| | ||||| |||||||| |||||||| || Sbjct 1025 GAAAGCACGTTACATTTGGTGTTACGTTTGCGCGGTGG 1062 >seq40838 Length=12235 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24841 TTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGCGACAGTGTA 24900 ||||| || || || ||||||||||| || || | |||||||| | | |||| | Sbjct 3965 TTTGTGAAGACTTTGACCGGCAAAACCATTACATTAGATGTCGAGCCCAATGACACAATC 3906 Query 24901 GAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAGCAACGTTTA 24960 ||| ||||||| ||||||| | ||| ||||| | || ||| || ||||| || Sbjct 3905 CAAAACGTTAAGGCAAAAATTCAAGAAAAGGAAGGAATCCCTCCTGAACAACAACGCTTG 3846 Query 24961 ATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGCATACAGAAA 25020 || | || || |||||| |||||||| ||| | | |||||||| ||| || ||| Sbjct 3845 ATCTTCGCAGGAAAACAATTGGAAGATGGTCGCACTTTAAGCGATTACAACATTCAAAAA 3786 Query 25021 GAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || |||| | || ||||||||||| || || || || Sbjct 3785 GAAAGCACGTTACACTTAGTGTTACGTTTACGTGGTGG 3748 >seq35091 Length=3122 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24841 TTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGCGACAGTGTA 24900 || || || || || ||||||||||| || ||| | ||||| ||| | | ||||| | Sbjct 1072 TTCGTGAAGACTTTGACCGGCAAAACCATTACCTTAGATGTTGAAGCCAACGACACGATC 1131 Query 24901 GAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAGCAACGTTTA 24960 ||| ||| || | ||||||| | || ||||| | || ||| || ||||| || Sbjct 1132 CAAAATGTCAAAGCAAAAATTCAAGATAAGGAAGGAATCCCCCCTGAACAACAACGCTTG 1191 Query 24961 ATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGCATACAGAAA 25020 || | ||| || |||||| ||||||| | ||| | | ||| |||| ||| || ||| Sbjct 1192 ATTTTTGCAGGAAAACAATTGGAAGACGGAAGAACTTTAAGCGACTACAACATTCAAAAA 1251 Query 25021 GAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || |||| | || || |||||||| ||||| || || Sbjct 1252 GAAAGCACGTTACACTTGGTGTTACGTTTGCGTGGTGG 1289 >seq50756 Length=522 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/224 (70%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 24841 TTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGCGACAGTGTA 24900 ||||| ||||||||||| || ||||| || || | ||||| ||| | | ||| | | | Sbjct 393 TTTGTGAAAACCTTAACTGGAAAAACTATCACGTTGGATGTGGAACCCAACGATACTATC 334 Query 24901 GAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAGCAACGTTTA 24960 ||| || || | |||||| | || |||||| | || ||| ||||||||||| Sbjct 333 CAAAACGTAAAAGCCAAAATTCAGGATAATGAAGGCATTCCTCATGAACAGCAACGTTTG 274 Query 24961 ATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGCATACAGAAA 25020 || | ||| ||||||||| |||| || ||| ||| |||||| | ||| || ||| Sbjct 273 ATTTTTGCCGGCAAACAATTGGATGACGGTCGTACTTTGAGCGATTATAACATTCAAAAA 214 Query 25021 GAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT-CAAT 25063 || ||| | ||||| || || || || || || ||| |||| Sbjct 213 GAAAGCACCTTGCATTTGGTCTTGCGTTTACGAGGTGGTGCAAT 170 >seq21059 Length=25508 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 24945 TGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGA 25004 ||| || ||||| ||||||| ||| ||||| ||| |||||||| | |||| ||| ||| Sbjct 22896 TGAACAACAACGATTAATATTTGCTGGCAAGCAATTGGAAGATGGAAGGACTTTGAGCGA 22837 Query 25005 TTACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||||| ||| || ||||| ||| || ||||||||||| || ||||| || ||| Sbjct 22836 TTACAACATTCAAAAAGAAAGCACACTGCATTTAGTGTTGCGTTTGCGTGGTGGT 22782 >seq28421 Length=944 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24841 TTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGCGACAGTGTA 24900 ||||| || || || ||||||||||| || || | |||||||| | | |||| | Sbjct 209 TTTGTGAAGACTTTGACCGGCAAAACCATTACATTAGATGTCGAGCCCAATGACACAATC 150 Query 24901 GAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAGCAACGTTTA 24960 ||| ||||||| ||||||| | ||| ||||| | || ||| || ||||| || Sbjct 149 CAAAACGTTAAGGCAAAAATTCAAGAAAAGGAAGGAATCCCTCCTGAACAACAACGCTTG 90 Query 24961 ATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGCATACAGAAA 25020 || | || || |||||| |||||||| ||| | | || ||||| ||| || ||| Sbjct 89 ATCTTCGCAGGAAAACAATTGGAAGATGGTCGCACTTTAAGCGGTTACAACATTCAAAAA 30 Query 25021 GAGGCCACGCTTCATTTAGTGTTACGATT 25049 || |||| | || ||||||||||| || Sbjct 29 GAAAGCACGTTACACTTAGTGTTACGTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418044971653280