Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq18560 96.9 1e-15 >seq18560 Length=3023 Score = 96.9 bits (106), Expect = 1e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 43823 CGACGGTCTGAAGGTCAAAGATCTGATGGGCCAGCCGTGGCGTCTTGCGTTTGCATTGCA 43882 ||| || ||||| || || |||| ||| |||||||| || ||||| || ||||| Sbjct 297 CGAGGGCTTGAAGCCAAAGGACTTGATCGGCATTCCGTGGCGGCTGGCGTTCGCCTTGCA 238 Query 43883 GGATGCCGGCTGGTATCTCCGACAG-GACATCATCTGGCACAAGCCGAACCCGATGCCCG 43941 ||||| ||||||||||| || ||| ||||| | ||| ||||||| ||| ||||||||| Sbjct 237 GGATGATGGCTGGTATCTGCG-CAGTGACATTGTGTGGAACAAGCCAAACGCGATGCCCG 179 Query 43942 AGAGCGT 43948 ||||||| Sbjct 178 AGAGCGT 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170569023875430