Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10537 131 2e-25 seq7650 123 3e-23 seq12010 114 2e-20 seq1807 95.1 2e-14 seq146 82.4 1e-10 >seq10537 Length=5798 Score = 131 bits (144), Expect = 2e-25 Identities = 207/294 (70%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 63585 TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| || ||||| || || || ||| |||||| ||||| | | |||||||| Sbjct 5382 TTTAATGTATCATAAATTCCCTCAATGGAATCATCTTTCATGGTCAACAGAAAACACGAC 5323 Query 63645 GACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63704 |||| ||| |||||| ||||| | || || || || || ||||| || ||||||||| Sbjct 5322 GACAGCTGGGGACGAGGTGTTCCTCCGTTGAACAACGTGGGCGAAGCATGAGTAAACCAT 5263 Query 63705 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCC 63763 |||| | | ||||||||||| || || || | ||| | ||| | || ||||| || Sbjct 5262 TTTTGACTCATCAGATTGTACGTTTCTATGGCAGCGTCCAAGTCCTCCATG-TGAATACC 5204 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823 | | || ||||| | ||||||||| ||||| || |||||| |||| ||| | Sbjct 5203 GAGGGACACTCGCATGAGCATGTGCTGTGGTCTCTCGGCAATTTCTCCATTTAATTTGAG 5144 Query 63824 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 |||||||||| || | ||||||| ||| || |||| || |||||| || Sbjct 5143 CAAGTAGGATCGCTCAAGCGTTTTAATACCGAAGTAGTCATAATCAAAGTCCCG 5090 >seq7650 Length=7814 Score = 123 bits (136), Expect = 3e-23 Identities = 195/277 (70%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 63590 CGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACAT 63649 ||| ||||| || ||||| ||| |||||| ||||| | | || ||||| || | Sbjct 3826 CGTATCATAAATTCCTTCAATGGAATCATCTTTCATGGTGATAAGGAAACAAGAGGATAG 3885 Query 63650 TTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63709 ||| |||||| || || ||| |||| || || || ||||| |||||||||||| Sbjct 3886 TTGCGGACGAGGCGTGCCACTATTGAATAGTGTGGGTGATGCGTGAATAAACCATTTTTG 3945 Query 63710 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTG 63768 | | | ||||||||| |||||||| | || | ||| | || || || || | | Sbjct 3946 ACTCATCAAATTGTACGTTTCAATAGCGGCATCCACGTCCTCCATG-TGTATACCCAGCG 4004 Query 63769 CGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGT 63828 |||||||||||||||||||| ||||| || | ||||| || | ||||||||| | Sbjct 4005 ACACACGCATTAACATGTGCTGCGGTCTCTCTGCTATTTTACCATTGACTTTCAACAAAT 4064 Query 63829 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63865 | ||| | |||| || || | ||||||||| | ||| Sbjct 4065 ACGATCTCTCCAGTGTCTTTACACCAAAATAATCGTA 4101 Score = 100 bits (110), Expect = 4e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||| ||||| | ||| ||| | ||| || || ||||| |||||||||||||| || Sbjct 1915 GTGAATTTAATGGCATCGGTTGCAGCTTTTGTGCGCAGATAATACATTCCCGTTTTAAGT 1974 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || ||| || ||||| ||||| || | ||| | || | | | || Sbjct 1975 CCCTTTTCCCAGCCATAAAAGTGCATGGACGACAATTTACCAAAATTGGCGCCCATCATG 2034 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || |||| |||||| |||||| || || ||||| | || |||||||| | ||| Sbjct 2035 TGTATGTTCAGCGATTGAGATTGATCAATAAACGCTCCGCGATCGGCAGCCATATCAATG 2094 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA 62260 || || ||||| | ||||||||| | |||||||| Sbjct 2095 ATTGTTTTTTGAGAAATTTCCCACACCGTTTTATA 2129 Score = 86.0 bits (94), Expect = 8e-12 Identities = 245/373 (66%), Gaps = 8/373 (2%) Strand=Plus/Plus Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 ||||||| |||||| || | ||| || | |||| || ||| ||||||||||| Sbjct 2641 TAAATGGCTTCAAATATATCTCGATTCAGTTGGAGTGCCTCTTTGCTGTCAAATGGATAG 2700 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | ||||||||||| ||||| | |||||| || ||||| || || || | ||| || Sbjct 2701 CGCATGAGAATAAACGTATCCGCCAGTCCTTGCACGCCAATGCCAATTGGACGGTGTTTC 2760 Query 62808 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT-GAG 62866 || || |||| |||||| | ||| |||||||| | || || | ||| || || Sbjct 2761 ACGTTCGATGTTTCGGCTTCTTTGACAGGGTAATAATTCACGTCAATCACTTTGTTCAAG 2820 Query 62867 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-TCGCCCATCTA 62925 | | || | | |||||| | | || ||||| |||||||| || | | ||| Sbjct 2821 TTCTTTGTC-ACAACTTTGGCGATTTCGACAAGTTTTTTCAAATCAAAGTCTCGCGTCTT 2879 Query 62926 T-----TACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGC 62980 | |||||| || |||||||| || |||| ||| ||||| || || || | | Sbjct 2880 TGGATCCACAAACTTGGGCAATGCAATCGACGCCAAATTGCACACTGCCACTTCGTCCGG 2939 Query 62981 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040 | | || | | || || ||||| | ||| |||| || || || ||||| | Sbjct 2940 AGATGTGTACTCCACAATTTCCGTGCACAAATTCGATGACTTTATTGTGCCCAAATTCTT 2999 Query 63041 TTGATTACTCTTT 63053 ||| || |||||| Sbjct 3000 TTGGTTGCTCTTT 3012 >seq12010 Length=13650 Score = 114 bits (126), Expect = 2e-20 Identities = 295/446 (66%), Gaps = 10/446 (2%) Strand=Plus/Plus Query 33272 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 33331 ||| |||||||| || |||| ||||| || || | | |||| ||||| || | || Sbjct 5328 TTGTGACATAACACCAGCTTTTGCATATTCTCCAACTCTTCTTTCAAAAAAGTTCGCCTT 5387 Query 33332 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAttttttt 33391 |||| ||| ||||| ||||||| | ||||| ||||||| ||| || |||| |||| Sbjct 5388 ACCTTGCAAGGATATCATTTCCATCCATTCAAAGGGATTGGCAACTTT--AAATATTTTG 5445 Query 33392 AAATCCC--AATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATT 33449 || || || || || || |||||| || || ||||| || ||| ||| | Sbjct 5446 GGATGCCCTAAAGCATGAAGCAGTCTATCGGCAACAAATTCAATGTATTGAGACATTCGT 5505 Query 33450 TCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATG 33509 ||| |||||||| || || || ||||| || || || | ||| || || | Sbjct 5506 TCAGCGTTCATTCCAATCAGATTGACTGGCAGTGCATCACACACAAACGTTTTCTC---G 5562 Query 33510 GAT---ACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAA 33566 || || |||| | | | ||| ||| |||| || || ||| | | Sbjct 5563 CATTTCACTGCATCTCTAACAATTTCGTGAACAATTTCGTCTTTCAACTGATTCACGCAC 5622 Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626 | ||| || ||| |||||||| ||||| || ||||| | |||||||| ||| Sbjct 5623 TCCCGGTACAGCAGACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTCA 5682 Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 || |||||| || || ||||| | |||||||| || ||||||||||| | | ||| Sbjct 5683 TTGCTAAACGTAAGGCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAAT 5742 Query 33687 GATCCGGAAAAGAAGATTCCTTCTAC 33712 |||||| || || ||||| ||||| Sbjct 5743 GATCCGCTGAAAAATATTCCCTCTAC 5768 >seq1807 Length=15346 Score = 95.1 bits (104), Expect = 2e-14 Identities = 199/297 (67%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 63584 TTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63643 |||||| || || |||| |||||| ||| || || ||||| | | | ||| || Sbjct 7322 TTTTAAAGTATCGTAGACGCCTTCAATGGAGTCTTCTTTCATGGTCAACAAAAAGCATGA 7263 Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 ||| | || |||| | || || ||||| || || || || ||||| || ||| ||| Sbjct 7262 AGATAGCTGTGGACGTGGCGTGCCAGCATTGAACAAAGTCGGGGAAGCATGAATAATCCA 7203 Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763 |||| | ||| |||||| || || | || | || ||||| ||| || || Sbjct 7202 CTTTTGACTAAGACAATTGTAAGTTTCGAGGGCCGCATCAATATCTGGCAAATGGATACC 7143 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823 | || |||||||||||||| || || ||||| |||||||||||| ||| ||| Sbjct 7142 CAATGATACACGCATTAACATATGTTGTGGTCTCTCAACAATTTTGCCGTTGGCCCTCAG 7083 Query 63824 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 ||| || || | || | ||||| | |||||| || | ||| | | |||| ||| Sbjct 7082 CAAATAAGAATATTGAAGTGTTTTGATACCAAAGTAATCATATTCATAATCTCTTTC 7026 >seq146 Length=10098 Score = 82.4 bits (90), Expect = 1e-10 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||| |||| | | | || | ||| || | | || ||||| || |||||||| Sbjct 8150 GTGAATTTGATGGCATCTGCAGCAGCTTTAGTCCTCAAGTAATACATGCCAGTTTTTAGC 8209 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || ||| || ||||||||||| || | |||| | || | | | || Sbjct 8210 CCCTTTTCCCAGCCATAAAAATGCATTGACGACAATTTGCCAAAATTAGCGCCCATCATG 8269 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || ||||||| |||||| ||||| | || ||||||||||| |||||||| | | | Sbjct 8270 TGTATATTCAACGATTGAGACTGATCAACAAACGCTCCCCTGTCAGCAGCCATATCCACG 8329 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA 62260 | || ||||||| |||||||||| ||| ||||| Sbjct 8330 ACTGTTTTTTGTGATATTTCCCAAACAGTCTTATA 8364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629417594969520