Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq17522 86.0 2e-12 >seq17522 Length=1101 Score = 86.0 bits (94), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 48666 CAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGGCATGAGCCAGGAGACGCTG 48725 || ||||| || ||||| || | || || | | |||||||||||||||||| ||| Sbjct 224 CACGTCGGAGCGCGCATGCGCCAGCGGCGTACTCTTCTCGGCATGAGCCAGGAGAAGCTT 165 Query 48726 GCTGCGCATC--TCGGCATCACCTTCCAGCAGGTCCAGAAATACGAAAAGGGCGCCAACC 48783 | | || | ||||| | |||||||||||| ||||||| ||||| |||| |||||| Sbjct 164 G--GGACAGCGGTCGGCCTGACCTTCCAGCAGATCCAGAAGTACGAGCGGGGCTCCAACC 107 Query 48784 GCGTCGGCGCCAGCAGGCTG 48803 | ||||| ||||| | ||| Sbjct 106 GGATCGGCTCCAGCCGCCTG 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183498817885524