Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1807 143 2e-29 seq12010 136 4e-27 seq146 105 6e-18 >seq1807 Length=15346 Score = 143 bits (158), Expect = 2e-29 Identities = 303/448 (68%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 37377 ATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATA 37436 |||||| | |||||||||| |||||| || ||||| || || | | || || | Sbjct 8698 ATATGTTTGGTAAGGTCCGTCAATTTTTGCGAGTTCACACGAAGTTGTCACAGCACCAAA 8639 Query 37437 ATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATA 37496 || || | || || || | ||||||| | | || ||| ||| || |||| | | Sbjct 8638 GTAAATAGCCTCAAAGATATCACGATTTAATTTCTGAGCCTCTGTGCTTTCAAATGGAAA 8579 Query 37497 GCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTT 37556 || || ||||| || ||||| |||| ||| |||||||| || || || || | ||| || Sbjct 8578 GCGCAGCAATATGAATACATCTGCCAGACCTTGAACACCAATGCCAATAGGGCGATGCTT 8519 Query 37557 CTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAG 37616 | ||| || | | ||| ||| |||||||||||| || || || ||||| || | Sbjct 8518 CAAATTCGAAGTTTTTGCCTCTTTCATTGGATAATAATTAATGTCAATAATTTTGTTCAA 8459 Query 37617 ATTTTTAACTAGTATTTTCGTAA-TTATTCTCAACTTGTCGAA-CATAAATACGT----T 37670 |||| || ||||||||||| || | || || || || || || | | ||| Sbjct 8458 ATTTCGGGTTACTATTTTCGTAACTTCTACT-AATTTTTCAAATCAAATGTTCGTGTCGC 8400 Query 37671 ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTC 37730 | ||| |||||||| |||||| ||||| | | |||||||||||||| ||||||| Sbjct 8399 AACATTGACAAATTTGGGCAACGAGATAGAGGCCAAATTACATACAGCAATTTCATCTGG 8340 Query 37731 GTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCT 37790 | | | | ||| ||||| || | ||| ||| |||||||||||||||| Sbjct 8339 AGATGTGTACTCCACAATTTCTGTGCATAAATTTGAAGATTTAATTGTTCCCAAATTCTG 8280 Query 37791 TTGATTGGATTTTTTATTACAAGAATCT 37818 ||||||| ||| ||| ||| |||| Sbjct 8279 TTGATTGCTTTTGCGATTGCAATGATCT 8252 >seq12010 Length=13650 Score = 136 bits (150), Expect = 4e-27 Identities = 289/421 (69%), Gaps = 18/421 (4%) Strand=Plus/Plus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| || |||||| || || |||||||| | ||| ||||||||||| ||| || | Sbjct 5637 ACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTCATTGCTAAACGTAAG 5696 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || |||||||| || || || |||| ||||||||| ||| |||||| || || || Sbjct 5697 GCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAATGATCCGCTGAAAAA 5756 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT-ATACCTTGTTGCTAGATA 11807 ||||||||| ||| ||| | || || | || | | || | | | || || || Sbjct 5757 TATTCCCTCTACACACGCATAAGCAACCAATCGT--TGAATGAAAGGTGCTTCCT---TA 5811 Query 11808 TCCATTTTCTG----GCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| ||| ||||| | || |||| ||| |||||||| || || || ||| Sbjct 5812 TCCATCCACTGCAATGCCCATTTTGCCTTCTGTTTCACGCATTCAATCTCGTCCATCGCG 5871 Query 11864 TTAAATAAATGCATTTTTTCTATATTATCTCTT-ACATATGTATCTATTAATAA--ACTA 11920 || || || ||| |||||| | | |||| |||||||| ||||| || || | || Sbjct 5872 TTGAACAAGTGCTGCTTTTCTTTGGCGT-TCTTCACATATGTGTCTATCAACAACGAGTA 5930 Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 | | ||| |||| |||||||| || |||||| |||| || || |||||||| Sbjct 5931 TGTCTCACTG--TGAACGTTTTCCATTGCAGCTTGAAACGCATAAAAGCAGCGTGCCTCA 5988 Query 11981 GAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACT 12039 | |||| || || || |||| ||| || |||||| || |||||| |||||||| Sbjct 5989 GGCAACTGCACGTCATTAATGAAAT-TTTTCGTTAAATTTTCCAATACAATGCCATCACT 6047 Query 12040 A 12040 | Sbjct 6048 A 6048 >seq146 Length=10098 Score = 105 bits (116), Expect = 6e-18 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| |||||||| || | || || || | ||| || |||| |||||||| |||||| Sbjct 8144 TCAACAGTGAATTTGATGGCATCTGCAGCAGCTTTAGTCCTCAAGTAATACATGCCAGTT 8203 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAG-GATT 36908 ||||||||| | ||| || ||||||||||| | || ||| | | ||| | Sbjct 8204 TTTAGCCCCTTTTCCCAGCCATAAAAATGCATTGACGACAATTTGCCAAAATTAGCGCCC 8263 Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 ||| || | ||| ||| |||||| ||||| | |||||| || ||||| || ||||| Sbjct 8264 ATC-ATGTGTATATTCAACGATTGAGACTGATCAACAAACGCTCCCCTGTCAGCAGCCAT 8322 Query 36969 TTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 || | | |||||| ||||| |||||||| || ||||| Sbjct 8323 ATCCACGACTGTTTTTTGTGATATTTCCCAAACAGTCTTATA 8364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468227234042960