Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10537 122 1e-22 seq12010 109 7e-19 seq7650 109 7e-19 seq1807 84.2 3e-11 >seq10537 Length=5798 Score = 122 bits (134), Expect = 1e-22 Identities = 205/294 (70%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 66378 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 ||||| |||||||| || ||||| || |||||| ||||| | | |||||||| Sbjct 5382 TTTAATGTATCATAAATTCCCTCAATGGAATCATCTTTCATGGTCAACAGAAAACACGAC 5323 Query 66438 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 66497 |||| ||| ||||| ||||| | || || || || || ||||| || ||||||||| Sbjct 5322 GACAGCTGGGGACGAGGTGTTCCTCCGTTGAACAACGTGGGCGAAGCATGAGTAAACCAT 5263 Query 66498 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCC 66556 |||| | | ||||||||||| || || || | ||| | ||| | || ||||| || Sbjct 5262 TTTTGACTCATCAGATTGTACGTTTCTATGGCAGCGTCCAAGTCCTCCATG-TGAATACC 5204 Query 66557 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 66616 | | || ||||| | ||||||||| ||||| || | || | |||| ||| | Sbjct 5203 GAGGGACACTCGCATGAGCATGTGCTGTGGTCTCTCGGCAATTTCTCCATTTAATTTGAG 5144 Query 66617 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 66670 |||||||||| || | ||||||| ||| || |||| || |||||| || Sbjct 5143 CAAGTAGGATCGCTCAAGCGTTTTAATACCGAAGTAGTCATAATCAAAGTCCCG 5090 >seq12010 Length=13650 Score = 109 bits (120), Expect = 7e-19 Identities = 301/459 (66%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 35848 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 35907 ||| |||||||| || |||| ||||| || || | | |||| ||||| || | || Sbjct 5328 TTGTGACATAACACCAGCTTTTGCATATTCTCCAACTCTTCTTTCAAAAAAGTTCGCCTT 5387 Query 35908 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAttttttt 35967 ||||| || ||||| ||||||| | || || |||||| ||| ||| | ||||| Sbjct 5388 ACCTTGCAAGGATATCATTTCCATCCATTCAAAGGGATTGGCAACTTTAAATATTTTGGG 5447 Query 35968 AAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTC 36027 | || || || || || |||||| || |||||||| || ||| ||| ||| Sbjct 5448 ATGCCCTAAAGCATGAAGCAGTCTATCGGCAACAAATTCAATGTATTGAGACATTCGTTC 5507 Query 36028 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAA----TTCTTGTTCAA 36083 | |||||||| || || || ||||| || || || | ||| |||| | || Sbjct 5508 AGCGTTCATTCCAATCAGATTGACTGGCAGTGCATCACACACAAACGTTTTCTCG--CAT 5565 Query 36084 TAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAAT 36143 | | | || ||| | | ||| || |||| || || ||| || | | Sbjct 5566 TTCA--CTGCATCTCTAACAATTTCGTGAACAATTTCGTCTTTCAACTGATTCACGCACT 5623 Query 36144 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 36203 ||| || ||| |||||||| ||| | || ||||| | |||||||| ||| | Sbjct 5624 CCCGGTACAGCAGACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTCAT 5683 Query 36204 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 36263 || |||||| || || ||||| | |||||||| || ||||||||||| | ||||| Sbjct 5684 TGCTAAACGTAAGGCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAATG 5743 Query 36264 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 36302 |||| || || ||||| ||||| |||| | |||| Sbjct 5744 ATCCGCTGAAAAATATTCCCTCTACACACGCATAAGCAA 5782 >seq7650 Length=7814 Score = 109 bits (120), Expect = 7e-19 Identities = 192/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 66383 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 66442 ||||||||| || || || || |||||| ||||| | | || ||||| || | Sbjct 3826 CGTATCATAAATTCCTTCAATGGAATCATCTTTCATGGTGATAAGGAAACAAGAGGATAG 3885 Query 66443 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 66502 ||| ||||| || || ||| |||| || || || ||||| |||||||||||| Sbjct 3886 TTGCGGACGAGGCGTGCCACTATTGAATAGTGTGGGTGATGCGTGAATAAACCATTTTTG 3945 Query 66503 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTG 66561 | | | ||||||||| |||||||| | || | ||| | || || || || | | Sbjct 3946 ACTCATCAAATTGTACGTTTCAATAGCGGCATCCACGTCCTCCATG-TGTATACCCAGCG 4004 Query 66562 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 66621 |||||||||||||||||||| ||||| || | || || || | ||||||||| | Sbjct 4005 ACACACGCATTAACATGTGCTGCGGTCTCTCTGCTATTTTACCATTGACTTTCAACAAAT 4064 Query 66622 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 | ||| | |||| || || | ||||||||| | ||| Sbjct 4065 ACGATCTCTCCAGTGTCTTTACACCAAAATAATCGTA 4101 Score = 100 bits (110), Expect = 4e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||| ||||| | ||| ||| | ||| || || ||||| |||||||||||||| || Sbjct 1915 GTGAATTTAATGGCATCGGTTGCAGCTTTTGTGCGCAGATAATACATTCCCGTTTTAAGT 1974 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || ||| || ||||| ||||| || | ||| | || | | | || Sbjct 1975 CCCTTTTCCCAGCCATAAAAGTGCATGGACGACAATTTACCAAAATTGGCGCCCATCATG 2034 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || |||| |||||| |||||| || || ||||| | || |||||||| | ||| Sbjct 2035 TGTATGTTCAGCGATTGAGATTGATCAATAAACGCTCCGCGATCGGCAGCCATATCAATG 2094 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 65053 || || ||||| | ||||||||| | |||||||| Sbjct 2095 ATTGTTTTTTGAGAAATTTCCCACACCGTTTTATA 2129 >seq1807 Length=15346 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886 || || || | ||| |||||||| ||| | ||| || || || || ||||| |||||| Sbjct 9368 TCTTTATCAACTGTAAATTGAATAGGATGAGCTGCTGGCTTGGTCCGCAGATAATACATT 9309 Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 64946 || || || | || |||||||||| ||||||||||| | || ||| || | | Sbjct 9308 CCTGTCTTCAACCCACGACTCCATCCATAAAAATGCATGGAAGAAAGCTTGCCAT-AGTT 9250 Query 64947 GGATCTGCT-ATATGGATATTCATAGATTGACTTTGATCGATGAA-GGCTCCCCTGTCTG 65004 | | || | |||| ||||| | ||||| ||||| | ||| || ||| || | Sbjct 9249 GCAATTGTTCATATAAATATTAAGGGATTGGGACTGATCAACGAATGGACCCCGTGCAAG 9190 Query 65005 CAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 65053 | ||||| | |||| | ||||| || |||||||||| ||||||||| Sbjct 9189 C-GCCATATCAATGACAATTTTTTGGGGGATTTCCCAAACAGTTTTATA 9142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657754786227560