Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq12010 131 2e-25 seq10537 127 3e-24 seq7650 127 3e-24 seq1807 93.3 6e-14 >seq12010 Length=13650 Score = 131 bits (144), Expect = 2e-25 Identities = 296/444 (67%), Gaps = 6/444 (1%) Strand=Plus/Plus Query 49650 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 49709 ||| |||||||| || |||| ||||| || || | | |||| ||||| || | || Sbjct 5328 TTGTGACATAACACCAGCTTTTGCATATTCTCCAACTCTTCTTTCAAAAAAGTTCGCCTT 5387 Query 49710 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 49769 |||| ||| ||||| ||||||| | ||||| ||||||| ||| ||| | ||||| Sbjct 5388 ACCTTGCAAGGATATCATTTCCATCCATTCAAAGGGATTGGCAACTTTAAATATTTTGGG 5447 Query 49770 AAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTC 49829 | || || || || || |||||| || |||||||| || ||| ||| ||| Sbjct 5448 ATGCCCTAAAGCATGAAGCAGTCTATCGGCAACAAATTCAATGTATTGAGACATTCGTTC 5507 Query 49830 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 49889 | |||||||| || || || ||||| || || || | ||| || || | | Sbjct 5508 AGCGTTCATTCCAATCAGATTGACTGGCAGTGCATCACACACAAACGTTTTCTC---GCA 5564 Query 49890 T---ACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATG 49946 | || |||||| | | ||| ||| |||| || || ||| || | | Sbjct 5565 TTTCACTGCATCTCTAACAATTTCGTGAACAATTTCGTCTTTCAACTGATTCACGCACTC 5624 Query 49947 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTT 50006 ||| || ||| |||||||| ||||| || ||||| | |||||||||||| || Sbjct 5625 CCGGTACAGCAGACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTCATT 5684 Query 50007 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 50066 | |||||| || || ||||| | |||||||| || ||||||||||| | |||||| Sbjct 5685 GCTAAACGTAAGGCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAATGA 5744 Query 50067 CCCAGAAAAGAAGATTCCTTCTAC 50090 || || || ||||| ||||| Sbjct 5745 TCCGCTGAAAAATATTCCCTCTAC 5768 >seq10537 Length=5798 Score = 127 bits (140), Expect = 3e-24 Identities = 206/294 (70%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 80257 TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| |||||||| || ||||| ||| |||||| ||||| | | |||||||| Sbjct 5382 TTTAATGTATCATAAATTCCCTCAATGGAATCATCTTTCATGGTCAACAGAAAACACGAC 5323 Query 80317 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 80376 |||| ||| ||||| ||||| | || || || || || ||||| || ||||||||| Sbjct 5322 GACAGCTGGGGACGAGGTGTTCCTCCGTTGAACAACGTGGGCGAAGCATGAGTAAACCAT 5263 Query 80377 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCC 80435 |||| | || ||||||||||| || || || | || | ||| | || ||||| || Sbjct 5262 TTTTGACTCATCAGATTGTACGTTTCTATGGCAGCGTCCAAGTCCTCCATG-TGAATACC 5204 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 80495 | | || ||||| | ||||||||| ||||| || | || | ||||| ||| | Sbjct 5203 GAGGGACACTCGCATGAGCATGTGCTGTGGTCTCTCGGCAATTTCTCCATTTAATTTGAG 5144 Query 80496 CAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 |||||| ||| || | ||||||| ||| || |||| || |||||| || Sbjct 5143 CAAGTAGGATCGCTCAAGCGTTTTAATACCGAAGTAGTCATAATCAAAGTCCCG 5090 >seq7650 Length=7814 Score = 127 bits (140), Expect = 3e-24 Identities = 196/277 (71%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 80262 CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACAT 80321 ||||||||| || || || ||| |||||| ||||| | | || ||||| || | Sbjct 3826 CGTATCATAAATTCCTTCAATGGAATCATCTTTCATGGTGATAAGGAAACAAGAGGATAG 3885 Query 80322 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 80381 ||| ||||| || || ||| |||| || || || ||||| |||||||||||| Sbjct 3886 TTGCGGACGAGGCGTGCCACTATTGAATAGTGTGGGTGATGCGTGAATAAACCATTTTTG 3945 Query 80382 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCG 80440 | || | ||||||||| |||||||| | || | ||| | || || || || | || Sbjct 3946 ACTCATCAAATTGTACGTTTCAATAGCGGCATCCACGTCCTCCATG-TGTATACCCAGCG 4004 Query 80441 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 80500 |||||||||||||||||||| ||||| || | || || ||| | ||||||||| | Sbjct 4005 ACACACGCATTAACATGTGCTGCGGTCTCTCTGCTATTTTACCATTGACTTTCAACAAAT 4064 Query 80501 AAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 | ||| | |||| || || | ||||||||| | ||| Sbjct 4065 ACGATCTCTCCAGTGTCTTTACACCAAAATAATCGTA 4101 >seq1807 Length=15346 Score = 93.3 bits (102), Expect = 6e-14 Identities = 198/293 (68%), Gaps = 7/293 (2%) Strand=Plus/Minus Query 79438 TCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCT 79497 ||||| | |||||||||||||| || ||||| | ||| || ||| ||| ||| || Sbjct 8559 TCTGCCAGACCTTGAACACCAATGCCAATAGGGCGATGCTTCAAATTCGAAGTTTTTGCC 8500 Query 79498 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTG 79557 ||| || |||||||||||||| || |||||||| || | ||| | | || || ||| Sbjct 8499 TCTTTCATTGGATAATAATTAATGTCAATAATTTTGTTCAAATTTCGGGTTACTATTTTC 8440 Query 79558 ACCACATCCTTTAGTTTGAGAAAATCAAA---TCGT---CCATCTATTACAAACATGTTC 79611 || || || ||| |||||||| |||| || | | ||||| || | Sbjct 8439 GTAACTTCTACTAATTT-TTCAAATCAAATGTTCGTGTCGCAACATTGACAAATTTGGGC 8381 Query 79612 AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATT 79671 |||| || ||| |||| |||||| || || | |||| | | | || | | ||| Sbjct 8380 AACGAGATAGAGGCCAAATTACATACAGCAATTTCATCTGGAGATGTGTACTCCACAATT 8321 Query 79672 TCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTT 79724 || ||||| | || | | ||||| ||||| ||||| |||||||| || || Sbjct 8320 TCTGTGCATAAATTTGAAGATTTAATTGTTCCCAAATTCTGTTGATTGCTTTT 8268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717812618506760