Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq12010 86.0 6e-12 seq22963 84.2 2e-11 >seq12010 Length=13650 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| || |||||| || | || || || | |||||| ||||| || ||| || | Sbjct 5637 ACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTCATTGCTAAACGTAAG 5696 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 ||||||||||| || || || |||| ||||||||||||| |||||| ||| || || Sbjct 5697 GCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAATGATCCGCTGAAAAA 5756 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14025 ||||||||| || ||| | || | ||||||| Sbjct 5757 TATTCCCTCTACACACGCATAAGCAACCAATCGTT 5791 >seq22963 Length=1357 Score = 84.2 bits (92), Expect = 2e-11 Identities = 279/426 (65%), Gaps = 25/426 (6%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||||||| ||| || || || | |||||| ||||| || ||| || | Sbjct 413 ACAAGCAAAATCAGTGTGAGATCCTTCGTCACGACTAATTAGTTCATTGATAAACGTAAG 354 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 ||||| ||||| | | || |||| ||||||||||||| |||||| | | || || Sbjct 353 GCCTGGAATCAAACAATGCTTCTTTAGCCAAAATATTGCACAAAATGATCAGCTGAAAAA 294 Query 13991 TATTCCCTCAACTGCA---GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||||| || ||||| ||| | || | ||||||| || | ||||| || || Sbjct 293 TATTC---CATCTGCACAGGCATAAGCAACCAATCGTTGAATGAAAGGTGCTTCATTATT 237 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 | ||||||| ||||||| | || | ||| | | || ||| || || || Sbjct 236 C---ATCCATTGCAATGCCCATTTTGCCTTCTGTTTCACGCATTCAATTTCGTCCATCGC 180 Query 14108 ATTAAATAAATATTCCTTCTCTTT--AGTACTTGAA--ATGTATGTATCAATAAGTAAGC 14163 || || || | | ||| ||||| || ||| || |||| | |||||| || | Sbjct 179 GTTGAACAAGTGCTGCTTTTCTTTGGCGTTCTTCAAATATGTGTTTATCAACAACGA--- 123 Query 14164 TATACATTTCAGAGTGTATGTTTTCCAT---AGCTATCTGAAAACCATAAAAGCATCTAG 14220 || | ||| || | ||||||||| |||| ||||| ||||||||||||| | Sbjct 122 -GTATGTCTCACTTTGAACGTTTTCCATTGAAGCT---TGAAACGCATAAAAGCATCTTG 67 Query 14221 CTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCA 14279 | || | | |||| || || | | |||| |||| | |||||||| || || | | Sbjct 66 CATCAGGCAATTGCACGTCATTAATGAAATTTTTC-GTTAAATTTTCCAATACAATGCAA 8 Query 14280 TCACTA 14285 |||||| Sbjct 7 TCACTA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479423318750600