Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7650 123 3e-23 seq10537 118 1e-21 seq12010 116 5e-21 seq146 89.7 7e-13 >seq7650 Length=7814 Score = 123 bits (136), Expect = 3e-23 Identities = 195/277 (70%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 72345 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 72404 ||||||||| || || || || |||||| ||||| | | || ||||| || | Sbjct 3826 CGTATCATAAATTCCTTCAATGGAATCATCTTTCATGGTGATAAGGAAACAAGAGGATAG 3885 Query 72405 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464 ||| ||||| || || ||| |||| || || || ||||| |||||||||||| Sbjct 3886 TTGCGGACGAGGCGTGCCACTATTGAATAGTGTGGGTGATGCGTGAATAAACCATTTTTG 3945 Query 72465 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCG 72523 | || | ||||||||| |||||||| | || | ||| | || ||||| || | || Sbjct 3946 ACTCATCAAATTGTACGTTTCAATAGCGGCATCCACGTCCTCCATG-TGTATACCCAGCG 4004 Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583 |||||||||||||| ||||| ||||| || | || || ||| | ||||||||| | Sbjct 4005 ACACACGCATTAACATGTGCTGCGGTCTCTCTGCTATTTTACCATTGACTTTCAACAAAT 4064 Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 | ||| | |||| || || | ||||||||| | ||| Sbjct 4065 ACGATCTCTCCAGTGTCTTTACACCAAAATAATCGTA 4101 Score = 89.7 bits (98), Expect = 7e-13 Identities = 252/383 (66%), Gaps = 8/383 (2%) Strand=Plus/Plus Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATC 71492 ||| ||| | ||||||| ||| || || | ||| || | |||| || ||| || Sbjct 2631 TGCGCCAAAGTAAATGGCTTCAAATATATCTCGATTCAGTTGGAGTGCCTCTTTGCTGTC 2690 Query 71493 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 ||||||||| | ||||||||||| || || | |||||| |||||||| || || || Sbjct 2691 AAATGGATAGCGCATGAGAATAAACGTATCCGCCAGTCCTTGCACGCCAATGCCAATTGG 2750 Query 71553 TCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 71612 | |||| || || || |||| |||||| | ||| |||||||| | || || | Sbjct 2751 ACGGTGTTTCACGTTCGATGTTTCGGCTTCTTTGACAGGGTAATAATTCACGTCAATCAC 2810 Query 71613 TTTATT-GAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-T 71670 ||| || || | | || | | |||||| | | || ||||| |||||||| | Sbjct 2811 TTTGTTCAAGTTCTTTGTC-ACAACTTTGGCGATTTCGACAAGTTTTTTCAAATCAAAGT 2869 Query 71671 CTCCCATCTAT-----TACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTA 71725 ||| | ||| | |||||| | ||| |||| || |||| ||| || || || | Sbjct 2870 CTCGCGTCTTTGGATCCACAAACTTGGGCAATGCAATCGACGCCAAATTGCACACTGCCA 2929 Query 71726 CCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTC 71785 | || | | | | || | | |||||| ||||| | ||| |||| || || | Sbjct 2930 CTTCGTCCGGAGATGTGTACTCCACAATTTCCGTGCACAAATTCGATGACTTTATTGTGC 2989 Query 71786 CTAAATTTTGTTGATTACTCTTT 71808 | ||||| | ||| || |||||| Sbjct 2990 CCAAATTCTTTTGGTTGCTCTTT 3012 >seq10537 Length=5798 Score = 118 bits (130), Expect = 1e-21 Identities = 204/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 72340 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| |||||||| || ||||| || |||||| ||||| | | |||||||| Sbjct 5382 TTTAATGTATCATAAATTCCCTCAATGGAATCATCTTTCATGGTCAACAGAAAACACGAC 5323 Query 72400 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 72459 |||| ||| ||||| ||||| | || || || || || ||||| || ||||||||| Sbjct 5322 GACAGCTGGGGACGAGGTGTTCCTCCGTTGAACAACGTGGGCGAAGCATGAGTAAACCAT 5263 Query 72460 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCC 72518 |||| | || ||||||||||| || || || | || | ||| | || || || || Sbjct 5262 TTTTGACTCATCAGATTGTACGTTTCTATGGCAGCGTCCAAGTCCTCCATG-TGAATACC 5204 Query 72519 TACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 72578 | | || ||||| | ||| ||||| ||||| || | || | ||||| ||| | Sbjct 5203 GAGGGACACTCGCATGAGCATGTGCTGTGGTCTCTCGGCAATTTCTCCATTTAATTTGAG 5144 Query 72579 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 72632 |||||||||| || | ||||||| ||| || |||| || |||||| || Sbjct 5143 CAAGTAGGATCGCTCAAGCGTTTTAATACCGAAGTAGTCATAATCAAAGTCCCG 5090 >seq12010 Length=13650 Score = 116 bits (128), Expect = 5e-21 Identities = 305/461 (66%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 41755 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTT 41814 ||| |||||||| || |||| ||||| || || | | |||| ||||| || | ||| Sbjct 5328 TTGTGACATAACACCAGCTTTTGCATATTCTCCAACTCTTCTTTCAAAAAAGTTCGCCTT 5387 Query 41815 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 41874 |||| ||| ||||| ||||||| | ||||| ||||||| ||| ||| | ||||| Sbjct 5388 ACCTTGCAAGGATATCATTTCCATCCATTCAAAGGGATTGGCAACTTTAAATATTTTGGG 5447 Query 41875 AAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTC 41934 | || || || || || |||||| || | ||||| || ||| ||| ||| Sbjct 5448 ATGCCCTAAAGCATGAAGCAGTCTATCGGCAACAAATTCAATGTATTGAGACATTCGTTC 5507 Query 41935 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAA----TTCTTGTTCAA 41990 | |||||||| || || || ||||| || || || | ||| |||| | || Sbjct 5508 AGCGTTCATTCCAATCAGATTGACTGGCAGTGCATCACACACAAACGTTTTCTCG--CAT 5565 Query 41991 TAGAGACCGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAA 42048 | | | || ||| | | ||| || | || |||| || || ||| || | Sbjct 5566 TTCA--CTGCATCTCTAACAATT--TCGTGAACAATTTCGTCTTTCAACTGATTCACGCA 5621 Query 42049 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTC 42108 | ||| || ||| |||||||| ||||| || || || | |||||||| ||| Sbjct 5622 CTCCCGGTACAGCAGACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTC 5681 Query 42109 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAA 42168 ||| |||||| || || ||||| | |||||||| || ||||||||||| | ||| Sbjct 5682 ATTGCTAAACGTAAGGCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAA 5741 Query 42169 TGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAA 42209 |||||| || || ||||| ||||| |||| | |||| Sbjct 5742 TGATCCGCTGAAAAATATTCCCTCTACACACGCATAAGCAA 5782 >seq146 Length=10098 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 70822 GCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAA 70881 || ||||| || | | || |||||||| |||||||| || ||| || |||||| Sbjct 8171 GCAGCTTTAGTCCTCAAGTAATACATGCCAGTTTTTAGCCCCTTTTCCCAGCCATAAAAA 8230 Query 70882 TGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTT 70941 ||||| || | |||| | | ||| | ||||| ||||||| ||| ||| Sbjct 8231 TGCATTGACGACAATTTGCCAAAATTAGCGCCCATCATGTGTATATTCAACGATTGAGAC 8290 Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||| | || ||||||||||| |||||||| | | || || ||||||| |||||| Sbjct 8291 TGATCAACAAACGCTCCCCTGTCAGCAGCCATATCCACGACTGTTTTTTGTGATATTTCC 8350 Query 71002 CAAATAGTTTTATA 71015 |||| ||| ||||| Sbjct 8351 CAAACAGTCTTATA 8364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670712951104840