Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq7650 105 1e-17 seq1807 86.0 9e-12 >seq7650 Length=7814 Score = 105 bits (116), Expect = 1e-17 Identities = 221/327 (68%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 96912 TACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGC 96971 || ||||||||||||||||||||| ||||||| ||| | ||| |||| |||||| ||| Sbjct 3440 TATTTGGAACCTTGGCACGCGGACATTTTTGAATTTTTGGAGCTGCGAAAAAACCATGGT 3381 Query 96972 TTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATG 97031 || || | | |||| || || ||||| || | | ||||| || || |||||||| Sbjct 3380 GCAGAGGAAGAAAGAGCAAGAGATTTGTTCCTTGGATTGTGGGTTCCCGACCTGTTCATG 3321 Query 97032 AAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTG 97091 | || || || | |||| | ||||| |||||||| || | || || ||| Sbjct 3320 GAACGTGTGAAAAGTGATGGCAAATGGAGTCTAATGTGTCCAAATGAGTGCAAAGGCCTG 3261 Query 97092 TCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA 97151 | || |||||| | |||||||| | |||||| |||||| || ||||| | Sbjct 3260 TTTGAGGTGTGGGGCAAGGAGTTTGAAGAGCTGTACACAAGCTACGAAAAAAAGGGCAAA 3201 Query 97152 -TACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGA 97210 | || || | | | | || || || || |||| || || || | | || | || Sbjct 3200 TTTCGCAAG-CAATTAAAGGCCCGTGAGCTCTGGAGCGCTATTTTGCAGTCGCAAATTGA 3142 Query 97211 GACTGGAACTCCGTACATTCTCTACAA 97237 |||||| ||||| ||||| | ||||| Sbjct 3141 GACTGGGACTCCTTACATGGTTTACAA 3115 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 97248 AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAA 97307 ||||| || ||||||||| | |||||||| || ||| || ||| ||||||||||| Sbjct 3017 AATCGAAAGAGCAACCAAAAGAATTTGGGCACAATAAAGTCATCGAATTTGTGCACGGAA 2958 Query 97308 ATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTG 97367 ||||| |||||| | ||||||||||| |||||| ||| | |||| ||| | || Sbjct 2957 ATTGTGGAGTACACATCTCCGGACGAAGTGGCAGTGTGCAATTTGGCGTCGATTGCATTG 2898 Query 97368 CCCAAGTTTGTAGA 97381 ||||||||||| || Sbjct 2897 CCCAAGTTTGTGGA 2884 >seq1807 Length=15346 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 96918 GAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAA 96977 || ||||||||||| || | ||||| ||| | || |||||| ||| ||| |||| Sbjct 7800 GAGCCTTGGCACGCTGATATATTTGAATTTTTGGATCTGCGCAGGAACCATGGAAGTGAA 7859 Query 96978 GAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGC 97037 || | |||| | | || ||||||| || || ||||| |||||| | |||||||| || Sbjct 7860 GAAGAACGAACACGCGATTTGTTTTTAGCGCTGTGGGTCCCAGATCTTTTCATGAATCGG 7919 Query 97038 GTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGAT 97097 || || | | || ||||| || ||||| || || || || ||| ||| Sbjct 7920 GTGAAAAATGATGAAATTTGGAGTCTGATGTGTCCGAACGAGTGCAAAGGATTGTTTGAT 7979 Query 97098 TGCTGGGGCGAAGAGTTTGA 97117 |||||||||||||||||| Sbjct 7980 GTCTGGGGCGAAGAGTTTGA 7999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740588544038840