Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq15556 82.4 8e-11 seq12196 82.4 8e-11 >seq15556 Length=627 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 |||||||||||||||||||| ||| | || ||| |||| | || |||||||| | Sbjct 408 CCGTGAGTGAGATGGCCGCCCTGGTCGAGGGCCATGCCGAGGAACGTGTCACCCGGTTGG 467 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || | | || |||||||| || || | || || || || || ||||| ||| Sbjct 468 AGCAGCGCCATGAACACGGCCTGGTTGGCCTGCGCGCCCGAGTGCGGCTGGACGTTGGCG 527 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 || ||| || || | || || ||||| || ||||| | |||| | || || Sbjct 528 AACGCGCAGTCGAAGAGCTTCTTCGCGCGCTCGATCGCCAGATCCTCGGCCTTGTCTACT 587 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCT 7157 | |||||||||| || || || | |||||| |||| Sbjct 588 TCCTCGCAGCCGCCGTAGTAGCGGCGACGCGGATAGCCCT 627 >seq12196 Length=1149 Score = 82.4 bits (90), Expect = 8e-11 Identities = 176/263 (67%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || || |||||| | ||| | ||| | | | | || ||||||||| Sbjct 661 CCGTGGGTCAGGTGACCGCCGTGGCCCAGGTTCATGCCCATGATGGTGTCGCCCGGCTTC 720 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 |||| | ||| || |||||||| ||||| |||||||| || || || ||||| ||| Sbjct 721 AGGATGGAGAAGTACACCGCCTGGTTGGCTTGCGAACCGGAGTGCGGCTGCACGTTGGCG 780 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | | | | ||||| | || | || || || ||||| | ||| | | || | Sbjct 781 TACTCGGCGCCGAACAGCTGCTTCACGCGGTCGATGGCCAGCTGCTCTACCACGTCAACG 840 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | |||| || || || | || |||||||| || || || || ||||||||||| | Sbjct 841 TGCTCGCAACCACCGTAGAAACGCTTGCCCGGGTAGCCTTCGGCGTACTTGTTGGTCAGC 900 Query 7178 ATAGAACCCTGTGCTTTCATAAC 7200 || ||||| |||| ||| || Sbjct 901 TGGGAGCCCTGGGCTTCCATGAC 923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555010481889640