Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq19824 96.9 3e-15 seq50756 89.7 4e-13 seq29189 87.8 2e-12 seq40838 86.0 5e-12 seq45780 84.2 2e-11 seq40549 84.2 2e-11 seq11259 84.2 2e-11 seq4850 82.4 6e-11 >seq19824 Length=8713 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||||||| | || ||||||||||| || ||| ||||| ||||| ||||||| | Sbjct 6564 CCACCTCGTAAACGCAGCACCAAATGTAAGGTGCTTTCCTTTTGAATGTTATAATCGCTC 6623 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||| |||||||| || ||| | || | | ||||| || || Sbjct 6624 AAAGTGCGACCGTCTTCTAATTGTTTTCCTGCAAAGATTAATCGTTGTTGTTCAGGAGGA 6683 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||| ||||| |||||| ||||| | || | |||| |||||| Sbjct 6684 ATGCCTTCCTTGTCTTGGATTTTTGCCTTCACGTTTTGAATTGTATCGTTGGGTTCCACA 6743 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAA 20199 |||| || |||||||| |||||||| ||||| || || Sbjct 6744 TCCAACGTGATGGTTTTTCCGGTCAAAGTTTTCACGAA 6781 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| | || ||||||||| | || ||| ||||| ||||| ||||||| | Sbjct 6859 CCACCACGTAATCGCAGCACCAAATGCAAAGTGCTTTCCTTTTGGATGTTATAATCGCTC 6918 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| ||| |||||||| ||||| || | || | | ||||| || ||| Sbjct 6919 AAAGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAGATCAAACGTTGTTGCTCAGGGGGG 6978 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| || || |||||| |||||| | | | |||| |||||| Sbjct 6979 ATTCCTTCCTTATCTTGAATTTTGGCTTTCACGTTTTGGATTGTATCGTTGGGTTCCACA 7038 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAA 20199 |||| ||||||||||| |||||||| || |||||||| Sbjct 7039 TCCAACGTAATGGTTTTTCCGGTCAATGTCTTGACAAA 7076 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 19979 tttCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCG 20038 |||||||||| || | |||||||||||| | || |||||||| |||||||| || Sbjct 6099 TTTCCTCCTCTCAAACGCAACACCAAATGCAAAGTGCTCTCTTTTTGGATGTTGTAGTCA 6158 Query 20039 CCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACG 20098 | || ||| ||| ||||||||||| |||||| |||| | | ||||| || Sbjct 6159 CTCAAAGTGCGGCCATCCTCCAATTGTTTTCCCGCAAAAATTAAACGTTGTTGCTCTGGA 6218 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCAC---CTGGCCAACAGAATCGCCAGGT 20155 || | ||||| || || |||||| ||| || |||| | | ||| ||| Sbjct 6219 GGAATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTCTGG---ATGGTGTCGTTGGGT 6275 Query 20156 TCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || |||| ||||| ||||| || ||||| || || || || |||||||| Sbjct 6276 TCAACGTCCAACGTAATTGTTTTTCCAGTCAAAGTCTTAACGAAGATTTGCAT 6328 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| | |||||||||||| | || ||| ||||| ||||| || |||| | Sbjct 7162 CCACCACGTAAACGCAACACCAAATGCAAGGTGCTTTCCTTTTGGATGTTATAGTCGCTC 7221 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||| || || ||| | || || | ||||| || || Sbjct 7222 AAAGTGCGACCGTCTTCCAATTGCTTTCCTGCAAAGATCAGACGTTGTTGCTCTGGAGGA 7281 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || ||||| || |||||| |||||| | | | |||| |||||| Sbjct 7282 ATTCCCTCTTTATCCTGAATTTTGGCTTTCACGTTTTGGATTGTATCGTTGGGTTCCACA 7341 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAA 20199 |||| ||||||||||| ||||| || || || ||||| Sbjct 7342 TCCAACGTAATGGTTTTTCCGGTTAAAGTCTTCACAAA 7379 >seq50756 Length=522 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||||||| | ||| |||||||| | || ||||||||| ||||| ||||||| | Sbjct 176 CCACCTCGTAAACGCAAGACCAAATGCAAGGTGCTTTCTTTTTGAATGTTATAATCGCTC 235 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAAT-AAGCCT--CTGTTGATCGACG 20098 | ||| | || |||||||||||||| ||| |||| || | | ||||| || || Sbjct 236 AAAGTACGACCGTCATCCAATTGTTTGCCGGCAAAAATCAAACGTTGCTGTTCAT-GA-- 292 Query 20099 GGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCC 20158 || | |||||| || || |||||| ||| || | | || |||| |||||| Sbjct 293 GGAATGCCTTCATTATCCTGAATTTTGGCTTTTACGTTTTGGATAGTATCGTTGGGTTCC 352 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAA 20199 |||| || || ||||| || || || ||||| ||||| Sbjct 353 ACATCCAACGTGATAGTTTTTCCAGTTAAGGTTTTCACAAA 393 >seq29189 Length=1803 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || |||||||||| ||| ||||||||| |||||||| || | || || | ||||| Sbjct 541 AAGACCAAATGTAAAGTACTTTCTTTTTGGATGTTGTAGTCACTCAAGGTGCGACAATCT 600 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 || ||||| ||||| ||| | || | | ||||| ||| || | |||||| || || Sbjct 601 TCTAATTGCTTGCCTGCAAAGATCAATCGTTGTTGTTCGGGAGGAATGCCTTCATTATCC 660 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| ||||| | | | || ||| ||| |||| || |||||| Sbjct 661 TGAATTTTGGCTTTCAAATTTTGGATGGTGTCATTAGGCTCCACATCCAACGTGATGGTT 720 Query 20177 TTGCCGGTCAACGTTTTGACAAA 20199 || |||||||| ||||||||||| Sbjct 721 TTTCCGGTCAAAGTTTTGACAAA 743 >seq40838 Length=12235 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 19924 AAACATGTGttta-at-ttaataaattttattataaaatttaaatatattttat---cat 19978 |||||||| ||| || || || ||||| | |||||||| ||| | || ||| ||| Sbjct 3982 AAACATGTTTTTTTATATTTTTATATTTTTTAATAAAATTGAAACAACTTATATTTGCAT 4041 Query 19979 tt-tCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATC 20037 ||| | |||||| | |||||||| ||||| || ||||||||| ||||| ||||| Sbjct 4042 CGCTCCACATCGTAAACGCAACACCAG-TGTAGCGTGCTTTCTTTTTGAATGTTATAATC 4100 Query 20038 GCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | || ||| || | |||||||||||||| | ||| |||| | | ||||| || Sbjct 4101 ACTCAAAGTCTTCCA-TCTTCCAATTGTTTTCAGGCAAAAATTAATCGTTGTTGCTCTGG 4159 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCAC 20133 || | |||||| ||||| ||||| |||||| Sbjct 4160 AGGAATGCCTTCATTGTCTTGGATTTTGGCTTTCAC 4195 >seq45780 Length=809 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 19981 tCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 ||| |||| ||| | ||| || ||||||| ||| ||| ||||| || |||||||||| Sbjct 530 TCCACCTCTTAAACGCAAGACTAAATGTAAAGTACTTTCCTTTTGAATATTGTAATCGCT 589 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 || || | ||||||||||| ||||| || |||| | | |||||| || || Sbjct 590 CAATGTGCGACCGTCTTCCAATTGCTTGCCAGCGAAAATCAATCGCTGTTGCTCAGGAGG 649 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | ||||||||| || |||||| || || | | || |||| ||| || Sbjct 650 AATGCCTTCTTTATCCTGAATTTTGGCCTTAACATTTTGGATAGTATCGTTAGGCTCTAC 709 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAA 20199 |||| || || || ||||||||||| ||||| || || Sbjct 710 GTCCAACGTTATCGTCTTGCCGGTCAAGGTTTTCACGAA 748 >seq40549 Length=748 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 19981 tCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 ||| |||| ||| | ||||||||| |||| ||| ||| ||||| |||||||| |||| Sbjct 356 TCCACCTCTTAAGCGCAACACCAAGTGTAAAGTACTTTCCTTTTGAATGTTGTAGTCGCT 297 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 || || | ||||||||||| ||||| || |||| | | |||||| || || Sbjct 296 CAATGTGCGACCGTCTTCCAATTGCTTGCCAGCGAAAATCAATCGCTGTTGCTCAGGAGG 237 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | ||||||||| || |||||| ||| || | | || |||| || || Sbjct 236 AATGCCTTCTTTATCCTGAATTTTGGCTTTAACATTTTGGATAGTATCGTTGGGCTCTAC 177 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAA 20199 |||| || || || || |||||||| ||||| || || Sbjct 176 GTCCAACGTGATCGTCTTACCGGTCAAGGTTTTCACGAA 138 >seq11259 Length=23860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 19981 tCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 ||| |||||||| | ||| |||||||| | ||| ||||||||| |||||||| || | Sbjct 23642 TCCACCTCGTAAACGCAAAACCAAATGCAAAGTACTTTCTTTTTGGATGTTGTAGTCACT 23701 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 || || |||||||||||| || || || | || | | ||||| || ||| Sbjct 23702 CAAGGTACGGCCATCTTCCAATTGCTTTCCTGCGAAGATCAAACGTTGTTGCTCAGGGGG 23761 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | ||||| || || ||||| |||||| | | | ||| ||||||| Sbjct 23762 AATACCTTCCTTATCCTGGATTTTGGCTTTCACATTTTGGATGGTGTCGTTAGGTTCCAC 23821 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAA 20199 |||| || || ||||| |||||||| ||||||||||| Sbjct 23822 ATCCAACGTGATTGTTTTTCCGGTCAAAGTTTTGACAAA 23860 >seq4850 Length=1942 Score = 82.4 bits (90), Expect = 6e-11 Identities = 191/282 (68%), Gaps = 7/282 (2%) Strand=Plus/Plus Query 19924 AAACATGTGttta-at-ttaataaattttattataaaatttaaatatattttat---cat 19978 |||||||| ||| || || || ||||| | |||||||| ||| | || ||| ||| Sbjct 60 AAACATGTTTTTTTATATTTTTATATTTTTTAATAAAATTGAAACAACTTATATTTGCAT 119 Query 19979 tt-tCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATC 20037 ||| | |||||| | |||||||| ||||| || ||||||||| ||||| ||||| Sbjct 120 CGCTCCACATCGTAAACGCAACACCAG-TGTAGCGTGCTTTCTTTTTGAATGTTATAATC 178 Query 20038 GCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 | || ||| | ||||||||||| ||| | ||| |||| | | ||||| || Sbjct 179 ACTCAAAGTCCTTCCATCTTCCAATTATTTTCAGGCAAAAATTAATCGTTGTTGCTCTGG 238 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 || | |||||| ||||| ||||| |||||| | || | ||| || || Sbjct 239 AGGAATGCCTTCATTGTCTTGGATTTTGGCTTTCACGTTTTGAATCGTGTCGTTGGGCTC 298 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAA 20199 |||| ||||| ||||| || || || ||||| || || Sbjct 299 GACGTCCAACGTAATTGTTTTTCCTGTTAAAGTTTTCACGAA 340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419327377051329