Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq12010 118 9e-22 >seq12010 Length=13650 Score = 118 bits (130), Expect = 9e-22 Identities = 475/731 (65%), Gaps = 23/731 (3%) Strand=Plus/Plus Query 12844 TGACATAACAGACATTTTTTG-ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 |||||||||| || ||||| |||||| | ||||||| ||||||||||||| | || | Sbjct 5331 TGACATAACAC-CAGCTTTTGCATATTCTCCAACTCTTCTTTCAAAAAAGTTCGCCTTAC 5389 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAG-TATTTTTT- 12960 ||| || || || ||||||| | || || ||||| ||| || |||||| Sbjct 5390 CTTGCAAGGATATCATTTCCATCCATTCAAAGGGATTGGC--AACTTTAAATATTTTGGG 5447 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 | |||||| | | | || ||| || |||||||| || ||||| || |||| || Sbjct 5448 ATGCCCTAAAGCATGAAGCAGTCTATCGGCAACAAATTCAATGTATTGAGACATTCGTTC 5507 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT-ATAT 13079 | ||||||||| || | || || |||| || || | ||| |||| || || | Sbjct 5508 AGCGTTCATTCCAATCAGATTGACTGGCAGTGCATCACACACAAACGTTTTCTCGCATTT 5567 Query 13080 CAACTGCTTCGATAACTATGTCTCTTA---TTACGTTCTCTAATGGAGGATTTGATAGA- 13135 || |||| || |||| || || | || ||| | || || || | | Sbjct 5568 CA-CTGCATCTCTAACAATTTCGTGAACAATTTCGTCTTTCAACTGA----TTCACGCAC 5622 Query 13136 TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCG 13195 | | ||| || ||| || |||||| |||||||||||| || | ||| ||||| || Sbjct 5623 TCCCGGTACAGCAGACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTCA 5682 Query 13196 TTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAAC 13255 || ||| || || || ||||| | || || || || | ||||||||| ||| ||| Sbjct 5683 TTGCTAAACGTAAGGCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAAT 5742 Query 13256 GAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAA-CCTTTCACCATACGT 13314 || || ||||||||||| || || ||| | || | ||| | || | | | || Sbjct 5743 GATCCGCTGAAAAATATTCCCTCTACACACGCATAAGCAACCAATCGTTGAATGAAAGGT 5802 Query 13315 ACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 || | ||| || ||||||| ||||| ||||| || ||||| ||||| | || Sbjct 5803 GCT-TCCTTA---TCCATCCACTGCAATGCCCATTTTGCCTTCTGTTTCACGCATTCAAT 5858 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 | || || ||||| || || | | ||||| || || | ||| || ||||| Sbjct 5859 CTCGTCCATCGCGTTGAACAAGTGCTGCTTTTCTTTGGCGTTCTTCACATATGTGTCTAT 5918 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 ||| || || | || |||| |||||||| || ||| || ||||||| || Sbjct 5919 CAACAACGAGTATGTCTCACTGTGAACGTTTTCCATTGCAGCTTGAAACGCATAAAAGCA 5978 Query 13495 TCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTA 13553 | ||||| | | ||| || || | | |||| |||| | ||| ||||| || | Sbjct 5979 GCGTGCCTCAGGCAACTGCACGTCATTAATGAAATTTTTC-GTTAAATTTTCCAATACAA 6037 Query 13554 TCCCGTCACTA 13564 | || |||||| Sbjct 6038 TGCCATCACTA 6048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430715520748218