Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq16859 262 1e-65 >seq16859 Length=703 Score = 262 bits (290), Expect = 1e-65 Identities = 354/485 (73%), Gaps = 15/485 (3%) Strand=Plus/Plus Query 18968 AGTTCGGACACGTCCACATTGGCGATGCGGACGACGTAACGCCAGTCGCGCAGGGTCAGG 19027 || || |||||||| | ||| ||||||| ||||| || ||||| ||||||| || ||| Sbjct 180 AGATCCGACACGTCGATGTTGCCGATGCGCACGACATAGCGCCAATCGCGCACCGTGAGG 239 Query 19028 CCGATGTCCCACTTGTAGTGGGTGCGGTAGCCCTGGTAGCGGCCGCCGGCGGCGTCGATC 19087 ||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| | Sbjct 240 CCGGCGTCCCACTTGTAGTGGGTGCGGTAGCCCTGGTAGCGATTGCCGGCCGCGTCGAGC 299 Query 19088 AGCGTGTCCTCGCCGAGGTCACGCGATTG-CAGGCCGGCCTGCGAACCCTTCGGGTAGAT 19146 ||||| | |||||||||||| | || | ||| ||||||| ||||| ||| |||| Sbjct 300 AGCGTCTGCTCGCCGAGGTCTTTC-ATCGACAGCCCGGCCTTGCTGCCCTTGGGGAAGAT 358 Query 19147 GGTATGCAGGGT--GTTCGGCCCCCACACCGTCAGCCAGATGGATGCGTTGTCGCTGCCC 19204 | |||| ||| | ||| ||||| | ||||||||| || | ||||||| |||| Sbjct 359 GCCGTGCACGGTAAGATCG--CCCCAGCCGACCAGCCAGATCGACGTGTTGTCGGAGCCC 416 Query 19205 GTGCCGCCGGCGTCGATGATGTTCTGGCCGTTCTCCG-CG--GAC----AGG--CTGTTG 19255 | |||||| | |||||| ||| | | || ||| || || ||| ||| ||||| Sbjct 417 GAACCGCCGCCCGCGATGAAGTTGTTGGCGGTCTGCGACGTCGACGTCGAGGTCGTGTTG 476 Query 19256 AAGCGCGGCGTCAGGCCCATGAACTTCTCGGCGTCGATGCTGGAATCGCCGTAGAACAGC 19315 ||||||||| | |||||||| |||| | | | || | ||||||||||||| Sbjct 477 TAGCGCGGCGCGAACCCCATGAAGCGTTCGGGATTGGTCGCGGTGTTGCCGTAGAACAGC 536 Query 19316 GTGGTCGCCTGGGTCTGGTTCATGCCTTCGATGAAGGCGCGGTCTTCGGACAGGCGCCAG 19375 || | ||| ||| || |||| |||||||||||| ||||||||||| | Sbjct 537 ACCCCGGCGAGCTGCTGCGTCAGCCCCTCGAGGAAGGCGCGGTCCTCGGACAGGCGATAA 596 Query 19376 GCGGCGGAATTGCCGTTGAGGTCGGCCAGGGCCTTGTCCACTTCGGCGTAGGTTTCCAGC 19435 | || | |||||||||||||||||||| |||||||| | || | ||||| || ||| Sbjct 597 GTCGCCGTGTTGCCGTTGAGGTCGGCCAGCGCCTTGTCGATCTCCGAATAGGTCTCGAGC 656 Query 19436 ATCCC 19440 || || Sbjct 657 ATGCC 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135774030348390