Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq11070 104 1e-17 seq31095 102 5e-17 >seq11070 Length=608 Score = 104 bits (114), Expect = 1e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 8173 GTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGAC 8232 ||| ||| ||||||| || || ||| |||||| | |||||| ||||| || || Sbjct 65 GTCGTGCACGTTGGCTGCCGTCACGACGGCGCTGTGCGCCAGGCCGGTCTTGCTGTCCAC 124 Query 8233 ACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC 8292 || ||||| ||||| || ||| |||||| |||||||| |||||| |||||||| Sbjct 125 GCCGATGTGCAGCTTCAGTCCGAAGAACCACTGCTTGCCTTTGCGGGTCTGGTGCATCTC 184 Query 8293 CGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATC 8352 ||||| | || | ||||||||||||||| || | | ||||||||||| || Sbjct 185 GCCGTCGCGCTCGACCTTGTCGTTCTTGGTCGAGCTCGGCGACGAGATGATGGTGGCGTC 244 Query 8353 GACCAAGGTGCC 8364 ||| | |||||| Sbjct 245 GACGATGGTGCC 256 >seq31095 Length=655 Score = 102 bits (112), Expect = 5e-17 Identities = 309/472 (65%), Gaps = 23/472 (5%) Strand=Plus/Plus Query 8203 GCTGTGGGTCAGGCCACTCTTGGCA-TCGACACCAATGTGGGCCTTCATGCCAAAGTGCC 8261 |||||| | ||| || | ||||| || ||||| ||||| ||||||||| || | || Sbjct 14 GCTGTGCGCCAGCCCGGT-TTGGCTGTCCACACCGATGTGCAGCTTCATGCCGAAATACC 72 Query 8262 ACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGG 8321 | || | |||||| ||||||||||| || || || || || || |||||||| Sbjct 73 ATTGCTGGCCTTTGCGAGTCTGATGCATGTCGGGGTCACGCGCCTTGTCGGCGTTCTTGG 132 Query 8322 TCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGC 8381 | || ||||| || | |||||||||||||| || | || || | | | ||| || Sbjct 133 TAGAACTGGGCGCTGCGATGATGGTGGCATCCACGATAGTTCCGGTGTTGACCTTGAAGC 192 Query 8382 CTGCTTCGGCCAGCCAGCGATTGATGGTCT-------TGAACAATTGGC--GGGCCAGTT 8432 | | || || || |||| ||| || |||||| ||| | |||||| Sbjct 193 C-----CCGC--TCCTGCAATTGCTGGCCTACCTTGGCGAACAA--GGCTTCGCCCAGTT 243 Query 8433 GATGCTGCTCCAGCAGGTGGCGGAAATTCATGATGGTGGTGCGGTCCGGCAAG---GCGC 8489 |||| | ||||| | |||||| |||| | |||||| || |||| | ||| Sbjct 244 TGTGCTCATGGAGCAGTTTGCGGAACTTCAGCAGCGTGGTGGCATCGGGCACGCGTTCGC 303 Query 8490 TATCCAGGGATAACCGGGCAAACAGACGCATGGAGGCGATTTCGTACAGAGCATCTTCCA 8549 | ||||| | | |||| | |||| |||| | || ||||| || || || Sbjct 304 GACCCAGGTCAATGCCCACAAAGCGGCGCAGACTGGCGCTGTCATACAGGGCCTCCTCGC 363 Query 8550 TCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTCCA 8609 ||| |||| ||||||| |||| || |||| | | || ||||| ||||| |||| Sbjct 364 ACGCCAGATCGGCCAGGTTGAACCAGTGTTGCAGGAAATGGATGCGCAGCATCCGCTCCA 423 Query 8610 GCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGAC 8661 | | || | |||||||| || ||||||||||| |||||| || || Sbjct 424 GGCCAATGGGCGGGCGGCCATTGCCTGCCTTGGGGTAGTGCGGCTCTATCAC 475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303047426245689