Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq16859 214 5e-51 >seq16859 Length=703 Score = 214 bits (236), Expect = 5e-51 Identities = 434/635 (68%), Gaps = 26/635 (4%) Strand=Plus/Minus Query 6353 TGCCGAACAAGAGCTCGACTGCACAGGTAACGGACAACTGCGGCATGCTCGAAGCGTACG 6412 |||||| ||||||| ||| | ||| | || ||| |||||||||||||| | || Sbjct 702 TGCCGACCAAGAGCACGAGCACGCAGATCACCGACTCGTGCGGCATGCTCGAGACCTATT 643 Query 6413 CGGAAGTCGACAAGGCGCTGGCCGATCTGAACGGCAACACCGCGGCATTCCGTCTGTCCG 6472 |||| ||||||||||||||||||| || ||||||||||| ||| | | || ||||||| Sbjct 642 CGGAGATCGACAAGGCGCTGGCCGACCTCAACGGCAACACGGCGACTTATCGCCTGTCCG 583 Query 6473 AAGACCGGGCGCAGATCGAGGGTATGAACCAGGAAGTTGCGCAGACGCTGTTCTACGGCA 6532 | ||||| || ||||||| ||| ||| | | || | |||||||||||||| Sbjct 582 AGGACCGCGCCTTCCTCGAGGGGCTGACGCAGCAGCTCGCCGGGGTGCTGTTCTACGGCA 523 Query 6533 ATGACGGCATCGCCCCCGCCGAATTCACGGGGCTGTCGCCGCGCTACAACTCG---TTGA 6589 | || | | |||| |||| |||| | |||||||||||||| || | || Sbjct 522 ACACCGCGACCAATCCCGAACGCTTCATGGGGTTCGCGCCGCGCTACAACACGACCTCGA 463 Query 6590 --GCGCCG----AGAACAAGGACAACGTCATCGACGCTGGCGGCACCGGATCCGACAACG 6643 || || ||| | ||||| |||||| | ||||| | || ||||||||| Sbjct 462 CGTCGACGTCGCAGACCGCCAACAACTTCATCGCGGGCGGCGGTTCGGGCTCCGACAACA 403 Query 6644 CCTCGGCATGGCTCGTTGTGTGGGGCCCGAATACCTGCCACTCGATCTACCCCAAGGGTT 6703 | ||| ||||| || | |||||| |||| ||| |||| ||||||||| Sbjct 402 CGTCGATCTGGCTGGTCGGCTGGGGCGATCTTACCGTGCACGGCATCTTCCCCAAGGGCA 343 Query 6704 CGAAAGCAGGTCTTTCGGTCGAGGACAAGGGCCAGGTCACCATCGAAAATGCGGACGGCA 6763 || || || || ||| | | ||| ||| || || | | |||| ||||| Sbjct 342 GCAAGGCCGGGCTGTCGATGAAAGACCTCGGCGAGCAGACGCTGCTCGACGCGGCCGGCA 283 Query 6764 ACGGCGGTCGGATGGAAGGTTACCGCACGCACTACAAGTGGGACATCGGCCTCACGCTGC 6823 | ||| | || |||||||| ||||||||||||||| |||||||||| ||| Sbjct 282 A------TCGCTACCAGGGCTACCGCACCCACTACAAGTGGGACGCCGGCCTCACGGTGC 229 Query 6824 GCGACTGGCGCTACGTGGCGCGGGTCTGCAACATCGACGTGTCGGACCTCGCGACGTCGG 6883 |||| |||||||| || | ||| || ||||||||||||||||||| || ||| ||| Sbjct 228 GCGATTGGCGCTATGTCGTGCGCATCGGCAACATCGACGTGTCGGATCTTGCGGGCTCG- 170 Query 6884 CCAACGCGCAGGCG--CTGATCAAGTACATGATCATGGCCGCCGAGCGA-ATCCCGCAAC 6940 |||| | | || ||| ||||| ||||| || || || | | ||||| |||| Sbjct 169 ---ACGC-CTGTCGATCTGGTCAAGCTGATGAT-GCGGGCGATGAACAAGATCCC-CAAC 116 Query 6941 -TCGGCATGGGCCGCGCCGTCTGGTACATGAACCG 6974 || ||| |||| ||| ||||||||||||||| Sbjct 115 ATCAAGATGTGCCGGCCCGCCTGGTACATGAACCG 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135524580946266