Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq17597 93.3 5e-14 seq12936 86.0 8e-12 seq14503 82.4 1e-10 >seq17597 Length=808 Score = 93.3 bits (102), Expect = 5e-14 Identities = 58/61 (95%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 118250 GTAGCTCAGTGGAATAGAGCAACCGCCTTCTAAGCGGTCGGTCGTTGGTTCGAGTCCAAC 118309 ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 7 GTAGCTCAGTGGA-TAGAGCAACCGCCTTCTAAGCGGTAGGTCGTTGGTTCGAATCCAAC 65 Query 118310 C 118310 | Sbjct 66 C 66 >seq12936 Length=684 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 118769 GGATTTCCGAGTGGTTAAAGGAATCTGACTGTAAATCAGACGGCTCTGCCTTCGCAGGTT 118828 ||||| ||||| ||| ||||| | | || |||||||| | |||||||||||||| ||||| Sbjct 320 GGATTCCCGAGCGGTCAAAGGGAGCAGATTGTAAATCTGCCGGCTCTGCCTTCGAAGGTT 379 Query 118829 CGAATCCTGCTCCTCCCACC 118848 |||||||| |||| ||||| Sbjct 380 CGAATCCTTCTCCCGCCACC 399 >seq14503 Length=736 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 120239 ACGGGGTGTAGCTCAGTTTGGTAGAGCACTCGCTTTGGGAGCGAGTGGCCGTAGGTTCGA 120298 |||| | ||||||||| |||||||||||| |||| |||||| || ||||| |||||||| Sbjct 633 ACGGAGCGTAGCTCAGCCTGGTAGAGCACTAGCTTCGGGAGCTAGGGGCCGGAGGTTCGA 574 Query 120299 ATCCTATCACCCCGA 120313 ||||| || | |||| Sbjct 573 ATCCTCTCGCTCCGA 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627569169673600