Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq12010 129 6e-25 seq22963 96.9 4e-15 >seq12010 Length=13650 Score = 129 bits (142), Expect = 6e-25 Identities = 358/542 (66%), Gaps = 19/542 (4%) Strand=Plus/Plus Query 21166 TTTTGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTT 21225 || |||||||| || |||| ||| || | ||||||| |||| ||||| || | ||| Sbjct 5328 TTGTGACATAACACCAGCTTTTGCATATTCTCCAACTCTTCTTTCAAAAAAGTTCGCCTT 5387 Query 21226 TCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATT 21285 |||| ||| ||||| |||||| | ||||| ||||| || |||||||||||| Sbjct 5388 ACCTTGCAAGGATATCATTTCCATCCATTCAAAGGGATTGGCAACTTTAAATATTTTGGG 5447 Query 21286 ACAACCCAGTTC-TGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATT 21344 | || | | ||| | | |||||| || |||||||| || |||||| ||||| || Sbjct 5448 ATGCCCTAAAGCATGA-AGCAGTCTATCGGCAACAAATTCAATGTATTGAGACATTCGTT 5506 Query 21345 CACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAG 21404 || ||||| || |||| || || || || || | || ||| | ||| || Sbjct 5507 CAGCGTTCATTCCAATCAGATTGACTGGCAGTGCATCACACACAAACGTTTTCTCGCATT 5566 Query 21405 AGACGGCTTC---AACAATTATATTTATTAT--CCTAGATGTACTAGGGGGATACAATAA 21459 || || || ||||||| | | || | | | ||| ||| || | Sbjct 5567 TCACTGCATCTCTAACAATTTCGTGAACAATTTCGTCTTTCAACT-----GATTCACGCA 5621 Query 21460 TTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTC 21519 | ||| || ||| || |||||| ||||| ||||| || | ||| |||| ||| Sbjct 5622 CTCCCGGTACAGCAGACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTC 5681 Query 21520 ATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA 21579 ||| ||| || | || ||||| || || | ||| |||| ||||||||||| ||| Sbjct 5682 ATTGCTAAACGTAAGGCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAA 5741 Query 21580 TGCTC--CTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTAT 21637 || || |||||| || || ||||| || ||| | ||||| ||||||| | | | Sbjct 5742 TGATCCGCTGAAA--AATATTCCCTCTACACACGCATAAGCAACCAATCGTTGAATGAAA 5799 Query 21638 GTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCA 21697 | | ||| |||||| ||||| | ||||||||||||||| | ||| | || ||| Sbjct 5800 GGTGCTTCCTTATCC---ATCCACTGCAATGCCCATTTTGCCTTCTGTTTCACGCATTCA 5856 Query 21698 AT 21699 || Sbjct 5857 AT 5858 >seq22963 Length=1357 Score = 96.9 bits (106), Expect = 4e-15 Identities = 347/529 (66%), Gaps = 34/529 (6%) Strand=Plus/Minus Query 21185 TTTTG-ATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||||| ||| || | ||| ||||||| ||||| || ||| |||| ||||||||| Sbjct 698 TTTTGCATATTCTCCGACTATTTTTTCAAAAAA---TGACTTACCTTGCAATGATATCAT 642 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTC-TGATA 21302 ||| || | ||||| |||||| || |||||||||||| | | ||| | | ||| | Sbjct 641 TTCTATCCATTCAAAGGGATTTACAACTTTAAATATTTTGTGATGACCTAAAGCATGA-A 583 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 ||||||| || |||||||| || |||||| ||||| |||| | ||||| | |||| Sbjct 582 GCAATCTATAGGCAACAAATTCAATGTATTGAGACATTCGTTCAGAGTTCATTACAATCA 523 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTC-TATAGAGACGGCT-TC-AACAA 21419 || || || || | | || ||| | ||| || || | | | || ||||| Sbjct 522 GATTGACTGGTAGTGAAT---CCACAAACGTTTTCTCGCATTTCAATGAATATCTAACAA 466 Query 21420 TTATATT------TATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCA 21473 || || | | ||||| | | ||| ||| || | | | | | || Sbjct 465 TT-TAGTGGACAATTTTATCTT---TCAACT-----GATGCACGCACTCACGATAAAGCA 415 Query 21474 AACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTA 21533 ||| ||||||||| || | ||||| || | ||| |||| |||||| ||| || | Sbjct 414 GACAAGCAAAATCAGTGTGAGATCCTTCGTCACGACTAATTAGTTCATTGATAAACGTAA 355 Query 21534 AACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTC--CTGAAAA 21591 || || || || | ||| |||| ||||||||||| ||||| || |||||| Sbjct 354 GGCCTGGAATCAAACAATGCTTCTTTAGCCAAAATATTGCACAAAATGATCAGCTGAAA- 296 Query 21592 GAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATC 21651 || || || || | ||| | ||||| ||||||| | | | | | ||| |||| Sbjct 295 -AATATTCCATCTGCACAGGCATAAGCAACCAATCGTTGAATGAAAGGTGCTTCATTATT 237 Query 21652 CAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATT 21700 | ||||||| ||||||||||||||| | ||| | || |||||| Sbjct 236 C---ATCCATTGCAATGCCCATTTTGCCTTCTGTTTCACGCATTCAATT 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531562983153160