Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq12010 131 2e-25 seq10537 122 1e-22 seq7650 109 7e-19 seq1807 84.2 3e-11 seq146 82.4 1e-10 >seq12010 Length=13650 Score = 131 bits (144), Expect = 2e-25 Identities = 296/444 (67%), Gaps = 6/444 (1%) Strand=Plus/Plus Query 32994 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 33053 ||| |||||||| || |||| ||||| || || | | |||| ||||| || | || Sbjct 5328 TTGTGACATAACACCAGCTTTTGCATATTCTCCAACTCTTCTTTCAAAAAAGTTCGCCTT 5387 Query 33054 TCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAttttttt 33113 |||| ||| ||||| ||||||| | ||||| ||||||| ||| ||| | ||||| Sbjct 5388 ACCTTGCAAGGATATCATTTCCATCCATTCAAAGGGATTGGCAACTTTAAATATTTTGGG 5447 Query 33114 AAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTC 33173 | || || || || || |||||| || || ||||| || ||| ||| ||| Sbjct 5448 ATGCCCTAAAGCATGAAGCAGTCTATCGGCAACAAATTCAATGTATTGAGACATTCGTTC 5507 Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 | |||||||| || || || ||||| || || || | ||| || || | | Sbjct 5508 AGCGTTCATTCCAATCAGATTGACTGGCAGTGCATCACACACAAACGTTTTCTC---GCA 5564 Query 33234 T---ACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATG 33290 | || |||||| | | ||| ||| |||| || || ||| || | | Sbjct 5565 TTTCACTGCATCTCTAACAATTTCGTGAACAATTTCGTCTTTCAACTGATTCACGCACTC 5624 Query 33291 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTT 33350 ||| || ||| |||||||| ||||| || ||||| | |||||||||||| || Sbjct 5625 CCGGTACAGCAGACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTCATT 5684 Query 33351 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33410 | |||||| || || ||||| | |||||||| || ||||||||||| | | ||||| Sbjct 5685 GCTAAACGTAAGGCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAATGA 5744 Query 33411 TCCAGAAAAGAAGATTCCTTCTAC 33434 ||| || || ||||| ||||| Sbjct 5745 TCCGCTGAAAAATATTCCCTCTAC 5768 >seq10537 Length=5798 Score = 122 bits (134), Expect = 1e-22 Identities = 205/294 (70%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| || ||||| || ||||| ||| |||||| ||||| | | |||||||| Sbjct 5382 TTTAATGTATCATAAATTCCCTCAATGGAATCATCTTTCATGGTCAACAGAAAACACGAC 5323 Query 63594 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 63653 |||| ||| ||||| ||||| | || || || || || ||||| || ||||||||| Sbjct 5322 GACAGCTGGGGACGAGGTGTTCCTCCGTTGAACAACGTGGGCGAAGCATGAGTAAACCAT 5263 Query 63654 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCC 63712 |||| | | ||||||||||| || || || | ||| | ||| | || ||||| || Sbjct 5262 TTTTGACTCATCAGATTGTACGTTTCTATGGCAGCGTCCAAGTCCTCCATG-TGAATACC 5204 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 | | || ||||| | ||||||||| ||||| || | || | |||| ||| | Sbjct 5203 GAGGGACACTCGCATGAGCATGTGCTGTGGTCTCTCGGCAATTTCTCCATTTAATTTGAG 5144 Query 63773 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826 |||||||||| || | ||||||| ||| || |||| || |||||| || Sbjct 5143 CAAGTAGGATCGCTCAAGCGTTTTAATACCGAAGTAGTCATAATCAAAGTCCCG 5090 >seq7650 Length=7814 Score = 109 bits (120), Expect = 7e-19 Identities = 192/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACAT 63598 ||| ||||| || || || ||| |||||| ||||| | | || ||||| || | Sbjct 3826 CGTATCATAAATTCCTTCAATGGAATCATCTTTCATGGTGATAAGGAAACAAGAGGATAG 3885 Query 63599 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63658 ||| ||||| || || ||| |||| || || || ||||| |||||||||||| Sbjct 3886 TTGCGGACGAGGCGTGCCACTATTGAATAGTGTGGGTGATGCGTGAATAAACCATTTTTG 3945 Query 63659 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTG 63717 | | | ||||||||| |||||||| | || | ||| | || || || || | | Sbjct 3946 ACTCATCAAATTGTACGTTTCAATAGCGGCATCCACGTCCTCCATG-TGTATACCCAGCG 4004 Query 63718 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63777 |||||||||||||||||||| ||||| || | || || || | ||||||||| | Sbjct 4005 ACACACGCATTAACATGTGCTGCGGTCTCTCTGCTATTTTACCATTGACTTTCAACAAAT 4064 Query 63778 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 | ||| | |||| || || | ||||||||| | ||| Sbjct 4065 ACGATCTCTCCAGTGTCTTTACACCAAAATAATCGTA 4101 Score = 100 bits (110), Expect = 4e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||| ||||| | ||| ||| | ||| || || ||||| |||||||||||||| || Sbjct 1915 GTGAATTTAATGGCATCGGTTGCAGCTTTTGTGCGCAGATAATACATTCCCGTTTTAAGT 1974 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || ||| || ||||| ||||| || | ||| | || | | | || Sbjct 1975 CCCTTTTCCCAGCCATAAAAGTGCATGGACGACAATTTACCAAAATTGGCGCCCATCATG 2034 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || |||| |||||| |||||| || || ||||| | || |||||||| | ||| Sbjct 2035 TGTATGTTCAGCGATTGAGATTGATCAATAAACGCTCCGCGATCGGCAGCCATATCAATG 2094 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62209 || || ||||| | ||||||||| | |||||||| Sbjct 2095 ATTGTTTTTTGAGAAATTTCCCACACCGTTTTATA 2129 >seq1807 Length=15346 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042 || || || | ||| |||||||| ||| | ||| || || || || ||||| |||||| Sbjct 9368 TCTTTATCAACTGTAAATTGAATAGGATGAGCTGCTGGCTTGGTCCGCAGATAATACATT 9309 Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102 || || || | || |||||||||| ||||||||||| | || ||| || | | Sbjct 9308 CCTGTCTTCAACCCACGACTCCATCCATAAAAATGCATGGAAGAAAGCTTGCCAT-AGTT 9250 Query 62103 GGATCTGCT-ATATGGATATTCATAGATTGACTTTGATCGATGAA-GGCTCCCCTGTCTG 62160 | | || | |||| ||||| | ||||| ||||| | ||| || ||| || | Sbjct 9249 GCAATTGTTCATATAAATATTAAGGGATTGGGACTGATCAACGAATGGACCCCGTGCAAG 9190 Query 62161 CAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62209 | ||||| | |||| | ||||| || |||||||||| ||||||||| Sbjct 9189 C-GCCATATCAATGACAATTTTTTGGGGGATTTCCCAAACAGTTTTATA 9142 >seq146 Length=10098 Score = 82.4 bits (90), Expect = 1e-10 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||| |||| | | | || | ||| || | | || ||||| || |||||||| Sbjct 8150 GTGAATTTGATGGCATCTGCAGCAGCTTTAGTCCTCAAGTAATACATGCCAGTTTTTAGC 8209 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || ||| || ||||||||||| || | |||| | || | | | || Sbjct 8210 CCCTTTTCCCAGCCATAAAAATGCATTGACGACAATTTGCCAAAATTAGCGCCCATCATG 8269 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || ||||||| |||||| ||||| | || ||||||||||| |||||||| | | | Sbjct 8270 TGTATATTCAACGATTGAGACTGATCAACAAACGCTCCCCTGTCAGCAGCCATATCCACG 8329 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62209 | || ||||||| |||||||||| ||| ||||| Sbjct 8330 ACTGTTTTTTGTGATATTTCCCAAACAGTCTTATA 8364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622551558446440