Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq19824 111 2e-19 seq45910 96.9 3e-15 seq23482 96.9 3e-15 seq50756 93.3 4e-14 seq40549 89.7 5e-13 seq36324 87.8 2e-12 seq35091 87.8 2e-12 seq11259 86.0 6e-12 seq32733 84.2 2e-11 seq38859 82.4 7e-11 seq19397 82.4 7e-11 seq18831 82.4 7e-11 >seq19824 Length=8713 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| || || |||||| | || || | || | ||| | ||| Sbjct 6559 ATGCAAATCTTTGTTAAAACCTTGACCGGAAAAACCATTACGTTGGACGTGGAACCCAAC 6500 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||| | | ||||| || || ||||| ||||| || || || || ||| Sbjct 6499 GACACCATCCAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGAGCAA 6440 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | | |||||||||| | || |||| |||| | |||||||| ||| Sbjct 6439 CAACGTCTCATCTTTGCCGGCAAACAATTAGAGGATGGAAGAACTTTGAGCGACTACAAC 6380 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGT 26977 || ||||||||| ||| | ||| |||| Sbjct 6379 ATCCAAAAAGAAAGTACCTTGCATTTGGT 6351 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || ||||||||| | || || | || | ||| | ||| Sbjct 6328 ATGCAAATCTTCGTTAAGACTTTGACTGGAAAAACAATTACGTTGGACGTTGAACCCAAC 6269 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||| || | |||||| || ||| || || ||||| || ||||| || ||| Sbjct 6268 GACACCATCCAGAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGAGCAA 6209 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | || |||||| | || |||| | | | || ||||| ||| Sbjct 6208 CAACGTTTAATTTTTGCGGGAAAACAATTGGAGGATGGCCGCACTTTGAGTGACTACAAC 6149 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || |||||||| ||| | ||| |||| || | | ||||||||||| Sbjct 6148 ATCCAAAAAGAGAGCACTTTGCATTTGGTGTTGCGTTTGAGAGGAGGAAA 6099 >seq45910 Length=1805 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 ||||| ||||| ||||||| ||| | ||||| | || | ||| | || ||||| ||| Sbjct 129 TTTGTGAAAACCCTAACTGGGAAAACAATCACATTGGATGTTGAACCCAATGACACGATC 188 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 | | || ||| ||||| ||||| ||||| || ||||| || || ||| |||| Sbjct 189 CAAAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATTCCTCCAGAACAGCAACGACTA 248 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | | || |||||| | ||||||| || | | | || || ||||||||||||||| Sbjct 249 ATCTTTGCTGGAAAACAATTAGAAGATGGAAGGACCTTGAGTGATTATAACATTCAAAAA 308 Query 26958 GAA 26960 ||| Sbjct 309 GAA 311 >seq23482 Length=3631 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 || || ||||||||||| || || | || ||| | || | || | |||||||| ||| Sbjct 639 TTCGTGAAAACATTAACGGGTAAGACAATTACCCTTGACGTCGAGCCCAACGACACAATC 698 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 | | || ||| || ||| ||||||||||| || ||||| || |||||| | | Sbjct 699 CAAAACGTTAAAGCCAAAATTCAGGACAAAGAAGGAATCCCTCCTGAACAACAACGTTTG 758 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | | |||||||||| | ||||||| |||| | ||||| |||||||| |||||| Sbjct 759 ATATTTGCCGGCAAACAATTAGAAGATGGAAGAACATTGAGCGATTATAACATCCAAAAA 818 Query 26958 G 26958 | Sbjct 819 G 819 >seq50756 Length=522 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 ||||| ||||| |||||||||||| | ||||| | || | ||| | ||||| || ||| Sbjct 393 TTTGTGAAAACCTTAACTGGAAAAACTATCACGTTGGATGTGGAACCCAACGATACTATC 334 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 | | || ||| || ||| || || ||||| || |||| || || ||| | | Sbjct 333 CAAAACGTAAAAGCCAAAATTCAGGATAATGAAGGCATTCCTCATGAACAGCAACGTTTG 274 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 |||| | |||||||||| | || || | | | | | ||||| ||||||||||||||| Sbjct 273 ATTTTTGCCGGCAAACAATTGGATGACGGTCGTACTTTGAGCGATTATAACATTCAAAAA 214 Query 26958 GAATCTACTATCCATCTGGTCCTG 26981 ||| || | ||| ||||| || Sbjct 213 GAAAGCACCTTGCATTTGGTCTTG 190 >seq40549 Length=748 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 || || ||||| || || || || ||||||| | || |||| | ||||| || ||| Sbjct 138 TTCGTGAAAACCTTGACCGGTAAGACGATCACGTTGGACGTAGAGCCCAACGATACTATC 197 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 | | || ||| || ||| || |||||||| || ||||| || ||||| || | Sbjct 198 CAAAATGTTAAAGCCAAAATTCAGGATAAAGAAGGCATTCCTCCTGAGCAACAGCGATTG 257 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 |||| || ||||| ||| | ||||| | | | | | |||||||| ||||||||||| Sbjct 258 ATTTTCGCTGGCAAGCAATTGGAAGACGGTCGCACATTGAGCGACTACAACATTCAAAAG 317 Query 26958 GAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||| |||| | || |||| || | | ||||| ||| Sbjct 318 GAAAGTACTTTACACTTGGTGTTGCGCTTAAGAGGTGGA 356 >seq36324 Length=413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 ||||| ||||| ||||||| ||| ||||||| | || | ||| | || ||||| ||| Sbjct 236 TTTGTGAAAACCCTAACTGGGAAAACGATCACATTGGACGTTGAACCCAATGACACGATC 295 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 | | || ||| || || ||||| ||||| || ||||| || |||||| || | Sbjct 296 CAAAATGTGAAAGCCAAAATCCAAGACAATGAAGGCATTCCTCCAGAACAACAACGATTA 355 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAA 26955 || | | ||| | |||| | ||||||| || | | | || ||||||||||| |||| Sbjct 356 ATCTTTGCCGGAAGACAATTAGAAGATGGAAGGACCTTGAGTGACTATAACATCCAAA 413 >seq35091 Length=3122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 ||||| ||||| ||||||| ||| | ||||| | || | || | || ||||| ||| Sbjct 756 TTTGTGAAAACTCTAACTGGGAAAACAATCACATTGGACGTTGAGCCCAATGACACGATC 815 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 | | || ||| || || ||||| ||||| || ||||| || || ||| || | Sbjct 816 CAAAATGTGAAAGCCAAAATCCAAGACAAGGAAGGCATTCCTCCAGAACAGCAACGATTA 875 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | | ||| |||||| | ||||||| || | | | || ||||||||||| |||||| Sbjct 876 ATCTTTGCCGGAAAACAATTAGAAGATGGAAGGACCTTGAGTGACTATAACATCCAAAAA 935 Query 26958 GAA 26960 ||| Sbjct 936 GAA 938 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 || || || || || || || ||| | || ||| | || | ||| | |||||||| ||| Sbjct 1072 TTCGTGAAGACTTTGACCGGCAAAACCATTACCTTAGATGTTGAAGCCAACGACACGATC 1131 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 | | |||||| ||| ||| || || ||||| || || || || |||||| | | Sbjct 1132 CAAAATGTCAAAGCAAAAATTCAAGATAAGGAAGGAATCCCCCCTGAACAACAACGCTTG 1191 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 |||| | || |||||| | ||||| | |||| | |||||||| |||||||||||| Sbjct 1192 ATTTTTGCAGGAAAACAATTGGAAGACGGAAGAACTTTAAGCGACTACAACATTCAAAAA 1251 Query 26958 GAA 26960 ||| Sbjct 1252 GAA 1254 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 || |||||||| || || |||||| | || || | || | || | |||||||| ||| Sbjct 90 TTCGTAAAAACCTTGACCGGAAAAACAATAACGTTGGACGTCGAGCCTAACGACACGATC 149 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 || | || ||| || ||| ||||| ||||| || || || || || ||| || | Sbjct 150 CAGAACGTGAAAGCCAAAATTCAAGACAAGGAAGGCATCCCACCAGAGCAGCAACGATTG 209 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | | ||| |||||| | || || | ||| | | || ||||||||||| ||||| Sbjct 210 ATCTTTGCCGGAAAACAATTAGAGGACGGCCGAACCTTAAGTGACTATAACATCCAAAAG 269 Query 26958 GAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||| | ||| |||| || || | |||| || Sbjct 270 GAAAGTACATTGCATTTGGTATTGCGATTACGAGGCGG 307 >seq11259 Length=23860 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 ||||| ||||| || || |||||| | ||||| | || | ||| | |||||||||||| Sbjct 23860 TTTGTCAAAACTTTGACCGGAAAAACAATCACGTTGGATGTGGAACCTAACGACACCATC 23801 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 | | || ||| || || || || ||||| || || || || |||||| | | Sbjct 23800 CAAAATGTGAAAGCCAAAATCCAGGATAAGGAAGGTATTCCCCCTGAGCAACAACGTTTG 23741 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | || || || ||| | ||||||| | | | | || ||||| ||||| |||||| Sbjct 23740 ATCTTCGCAGGAAAGCAATTGGAAGATGGCCGTACCTTGAGTGACTACAACATCCAAAAA 23681 Query 26958 GAATCTACTATCCATCTGGT 26977 ||| |||| | ||| |||| Sbjct 23680 GAAAGTACTTTGCATTTGGT 23661 >seq32733 Length=1362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 26763 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA 26822 |||||||| ||| ||||| ||||| || || |||||| | ||||| | || | || Sbjct 43 AACAAAAT---AGT-TTTGTGAAAACTTTGACGGGAAAAACCATCACGTTGGATGTGGAG 98 Query 26823 TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCC 26882 | || ||||||||| | | |||||| ||| ||| ||||| ||||| || || || Sbjct 99 CCCAATGACACCATCCAAAACGTCAAAGCAAAAATTCAGGACAATGAAGGAATTCCCCCA 158 Query 26883 GATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGAC 26942 || |||||| | || | | | |||| ||| | ||||| | ||| | ||||| Sbjct 159 GAGCAACAACATTTGATCTTTGCCTGCAAGCAATTGGAAGACGGCCGAACTTTGAGCGAT 218 Query 26943 TATAACATTCAAAA 26956 |||||||||||||| Sbjct 219 TATAACATTCAAAA 232 >seq38859 Length=993 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 || || ||||| ||||| |||||| | ||||| | || | || | |||||||| ||| Sbjct 307 TTCGTGAAAACCTTAACCGGAAAAACAATCACGTTGGATGTCGAGCCCAACGACACAATC 366 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 || | || ||| || || ||||| ||||| || || || || || ||| || | Sbjct 367 CAGAACGTGAAAGCCAAAATCCAAGACAAGGAAGGCATCCCACCAGAGCAGCAACGATTG 426 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | | || || ||| | || |||| ||| | | || ||||||||||| |||||| Sbjct 427 ATCTTTGCTGGAAAGCAATTAGAGGATGGCCGAACCTTGAGTGACTATAACATCCAAAAA 486 Query 26958 GAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||| | ||| |||| || || | |||| || Sbjct 487 GAAAGTACGTTGCATTTGGTATTGCGATTACGAGGCGG 524 >seq19397 Length=4183 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 ||||| ||||| || ||||||||| | ||||| | || | || | || ||||||||| Sbjct 3608 TTTGTCAAAACTTTGACTGGAAAAACAATCACGTTGGATGTGGAGCCCAATGACACCATC 3667 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 | | || ||| || || || || ||||| || || || || |||||| || | Sbjct 3668 CAAAACGTGAAAGCCAAAATCCAGGATAAGGAAGGTATCCCCCCTGAGCAACAACGATTG 3727 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | | || || ||| | ||||||| | | | | |||||||||||||| |||||| Sbjct 3728 ATCTTTGCAGGAAAGCAATTAGAAGATGGCCGCACCCTGAGCGACTATAACATCCAAAAA 3787 Query 26958 GAA 26960 ||| Sbjct 3788 GAA 3790 >seq18831 Length=11894 Score = 82.4 bits (90), Expect = 7e-11 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 26778 TTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATC 26837 || || ||||| |||||||||||| | |||| ||| | || | | |||||||| ||| Sbjct 2299 TTCGTGAAAACCTTAACTGGAAAA-CAATCA-CATTGGATGTCGAGCCAACGACACGATC 2242 Query 26838 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTC 26897 || || ||| ||||| ||||| ||||| || ||||| || || ||| ||| Sbjct 2241 CAGAGTGTGAAAGCCAAGATCCAAGACAATGAAGGCATTCCTCCAGAGCAGCAA--ACTG 2184 Query 26898 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAA 26957 || | | ||| || ||| | || |||| ||| | | ||||| |||||||| |||||| Sbjct 2183 ATCTTTGCCGGAAAGCAATTGGAGGATGGCCGAACCTTGAGCGATTATAACATCCAAAAA 2124 Query 26958 GAA 26960 ||| Sbjct 2123 GAA 2121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478358395526480