Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq12010 163 7e-35 seq22963 127 5e-24 seq1807 86.0 2e-11 >seq12010 Length=13650 Score = 163 bits (180), Expect = 7e-35 Identities = 356/523 (68%), Gaps = 29/523 (6%) Strand=Plus/Minus Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGAACAATGAA----CGTTCATTCGCGGAACGTCT 22496 |||||| | ||||| || | |||||| | || ||| | ||||||| |||| | Sbjct 5840 AAGGCAAAATGGGCATTGCAGTGGATGGATAAGGAAGCACCTTTCATTC----AACGATT 5785 Query 22497 TATTGCATTTGCTGTG-GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTT 22555 |||| | ||| ||| || || || || || || ||| ||||||||||||| |||| Sbjct 5784 GGTTGCTTATGC-GTGTGTAGAGGGAATATTTTTCAGCGGATCATTTTGTGCAATATTTT 5726 Query 22556 GGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAG 22615 ||||||| || |||| | ||||| || || |||||| ||||| ||||||| || | Sbjct 5725 GGCTAAAGAAGCGTGGTTTGATGCCAGGCCTTACGTTTAGCAATGAACTAATTAGTCGTG 5666 Query 22616 ATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCA--TAA 22673 | || || | || || ||||| || ||| |||| || ||| | | | ||| | | Sbjct 5665 ACGAAGGATTGCACACTGATTTCGCTTGTCTGCTGTACCGGGAGTGCGTGAATCAGTTGA 5606 Query 22674 ACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGA----ACGTC 22729 | | | |||| ||| | || ||| ||| | ||||||| || || |||| Sbjct 5605 A-----AGACGAAATTGTTCACGAAATTGTTAGAGATGCAGTGAAATGCGAGAAAACGT- 5552 Query 22730 TATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTA 22789 || | || || || | ||||| | ||| ||||| || || || ||| |||| | Sbjct 5551 ---TTGTGTGTGATGCACTGCCAGTCAATCTGATTGGAATGAACGCTGAACGAATGTCTC 5495 Query 22790 CATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGC-AAAGCATTAT 22848 ||| ||| |||||||||| ||| | || | | | | || || | ||| ||| | Sbjct 5494 AATACATTGAATTTGTTGCCGATAGACTGCTTCATGCTTTAGGGCATCCCAAAATATT-T 5436 Query 22849 AACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTG-AAGGAAAGACCAATTT 22907 || || | ||||| ||||||||||||||| | || || |||| |||| ||| | || || Sbjct 5435 AAAGTTGCCAATCCCTTTGAATGGATGGAAATGATATC-CTTGCAAGGTAAGGCGAACTT 5377 Query 22908 CTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || |||| ||||||||| ||||| |||||| ||||||||| Sbjct 5376 TTTTGAAAGAAGAGTTGGAGAATATGCAAAAGCTGGTGTTATG 5334 >seq22963 Length=1357 Score = 127 bits (140), Expect = 5e-24 Identities = 348/518 (67%), Gaps = 25/518 (5%) Strand=Plus/Plus Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGAACAATGAA----CGTTCATTCGCGGAACGTCT 22496 |||||| | ||||| || |||||||||| |||||| | ||||||| |||| | Sbjct 210 AAGGCAAAATGGGCATTGCAATGGATGAATAATGAAGCACCTTTCATTC----AACGATT 265 Query 22497 TATTGCATTTGC-TGTGGTTGAAGGCATTTTCTTTTCTG--GAGCATTTTGTGCAATCTT 22553 |||| | ||| |||| || || || || |||| | || ||||||||||||| || Sbjct 266 GGTTGCTTATGCCTGTGCA-GATGGAATATT--TTTCAGCTGATCATTTTGTGCAATATT 322 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||||||| || | | | || || || || |||||| ||||| ||||||| || Sbjct 323 TTGGCTAAAGAAGCATTGTTTGATTCCAGGCCTTACGTTTATCAATGAACTAATTAGTCG 382 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAA 22673 || || || ||| || |||||||| ||| |||| ||||| | | | | ||| | Sbjct 383 TGACGAAGGATCTCACACTGATTTTGCTTGTCTGCTTTATCG---TGAGTGCGTGCATCA 439 Query 22674 ACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATT 22733 | | || ||| ||| | | ||| ||| | || || ||||| || | | Sbjct 440 GTTGAAAGATAAAATTGTCCACTAAATTGTTAGATATTCA-TTGAA-ATGCGAGAAAACG 497 Query 22734 TATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATA 22793 | | || || | ||||||| | ||| |||| || || | ||| |||| | ||| Sbjct 498 TTTGTG-GATTCACTACCAGTCAATCTGATTGTAATGAACTCTGAACGAATGTCTCAATA 556 Query 22794 TATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTAT-GCAAAGCATTATAACG 22852 ||| |||||||||| || | | | | | | ||| || |||| ||| ||| | Sbjct 557 CATTGAATTTGTTGCCTATAGATTGCTTCATGCTTTAGGTCATCACAAAATATT-TAAAG 615 Query 22853 TCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCG 22912 | || ||||| ||||||||||| ||| | || ||| | |||| ||| | |||| || | Sbjct 616 TTGTAAATCCCTTTGAATGGATAGAAATGATATCATTGCAAGGTAAGTC--ATTT-TTTG 672 Query 22913 AAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 |||||| ||| || ||||| |||||| ||||||||| Sbjct 673 AAAAAATAGTCGGAGAATATGCAAAAGCTGGTGTTATG 710 >seq1807 Length=15346 Score = 86.0 bits (94), Expect = 2e-11 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 |||||||| | || || ||||||||||||||||| | | |||||||||| || ||| Sbjct 7101 ATTGTTGAGAGACCACAACATATGTTAATGCGTGTATCATTGGGTATCCATTTGCCAGAT 7160 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTATTCACGCACGCCAC 363560 ||||||| || | ||||| || || ||| ||| ||| ||| | || || | Sbjct 7161 ATTGATGCGGCCCTCGAAACTTACAATTGTCTTAGTCAAAAGTGGATT-ATTCATGCTTC 7219 Query 363561 GCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAA 363620 || || ||| ||||||||| || | ||||||| | ||||| |||||| | | | Sbjct 7220 CCCGACTTTGTTCAATGCTGGCACGCCACGTCCACAGCTATCTTCATGCTTTTTGTTGAC 7279 Query 363621 AATGAAGGACGATTCCATCGAGGG 363644 ||||| || || ||||| || || Sbjct 7280 CATGAAAGAAGACTCCATTGAAGG 7303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302505129432638