Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq19397 96.9 3e-15 seq19824 95.1 1e-14 seq50756 91.5 1e-13 seq23482 89.7 4e-13 seq45910 86.0 5e-12 seq35091 84.2 2e-11 >seq19397 Length=4183 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 115295 TTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACACTGTT 115354 ||||||||||| | || |||||||| || || | || |||| ||| ||||| | Sbjct 3608 TTTGTCAAAACTTTGACTGGAAAAACAATCACGTTGGATGTGGAGCCCAATGACACCATC 3667 Query 115355 GGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTT 115414 | | || ||| ||||| ||||| ||||| ||||| ||| || ||| || | Sbjct 3668 CAAAACGTGAAAGCCAAAATCCAGGATAAGGAAGGTATCCCCCCTGAGCAACAACGATTG 3727 Query 115415 ATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAA 115474 || | ||| || || ||||||||||||| | ||| || ||| |||||||| |||||| Sbjct 3728 ATCTTTGCAGGAAAGCAATTAGAAGATGGCCGCACCCTGAGCGACTATAACATCCAAAAA 3787 Query 115475 GAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || |||| |||||||| |||| || || || Sbjct 3788 GAAAGCACCTTACACTTGGTGTTGCGATTACGTGGTGG 3825 >seq19824 Length=8713 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| ||||| | || |||||||||||||| | || ||| ||| | Sbjct 6559 ATGCAAATCTTTGTTAAAACCTTGACCGGAAAAACCATTACGTTGGACGTGGAACCCAAC 6500 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | || || ||||| || || ||||| | || ||| || Sbjct 6499 GACACCATCCAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGAGCAA 6440 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || || | ||| |||||||||||||| |||| | ||| || ||| || ||| Sbjct 6439 CAACGTCTCATCTTTGCCGGCAAACAATTAGAGGATGGAAGAACTTTGAGCGACTACAAC 6380 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| ||| | ||| |||| ||| | ||||| || || Sbjct 6379 ATCCAAAAAGAAAGTACCTTGCATTTGGTATTGCGTTTGCGTGGTGG 6333 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 115295 TTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACACTGTT 115354 |||||||| || | || |||||||||||||| | || ||| ||| ||| || | Sbjct 7076 TTTGTCAAGACATTGACCGGAAAAACCATTACGTTGGATGTGGAACCCAACGATACAATC 7017 Query 115355 GGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTT 115414 | | || ||| |||||| ||||| ||||| ||||| ||| || ||| | | Sbjct 7016 CAAAACGTGAAAGCCAAAATTCAAGATAAGGAAGGAATCCCCCCTGAGCAACAACGTTTG 6957 Query 115415 ATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAA 115474 || | || ||||| ||||| || |||| | || || |||||||||||| ||||| Sbjct 6956 ATCTTCGCCGGCAAGCAATTGGAGGATGGCCGCACTTTGAGCGATTATAACATCCAAAAG 6897 Query 115475 GAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||| | ||| ||||| || |||| || || || Sbjct 6896 GAAAGCACTTTGCATTTGGTGCTGCGATTACGTGGTGG 6859 >seq50756 Length=522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 115295 TTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACACTGTT 115354 ||||| ||||| | || |||||||| || || | || ||| ||| ||| ||| | Sbjct 393 TTTGTGAAAACCTTAACTGGAAAAACTATCACGTTGGATGTGGAACCCAACGATACTATC 334 Query 115355 GGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTT 115414 | | |||||| |||||| ||||| |||||| | || ||| |||||| | | Sbjct 333 CAAAACGTAAAAGCCAAAATTCAGGATAATGAAGGCATTCCTCATGAACAGCAACGTTTG 274 Query 115415 ATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAA 115474 |||| ||| ||||||||||| || || | || || ||||||||||||||||||| Sbjct 273 ATTTTTGCCGGCAAACAATTGGATGACGGTCGTACTTTGAGCGATTATAACATTCAAAAA 214 Query 115475 GAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || | ||| |||| ||| | || ||||| || Sbjct 213 GAAAGCACCTTGCATTTGGTCTTGCGTTTACGAGGTGG 176 >seq23482 Length=3631 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 115294 TTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACACTGT 115353 ||| || ||||| | ||||| || || |||||| | || ||| ||| |||||| | Sbjct 638 TTTCGTGAAAACATTAACGGGTAAGACAATTACCCTTGACGTCGAGCCCAACGACACAAT 697 Query 115354 TGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACT 115413 | | || ||| |||||| || |||||||| |||| ||| || ||| | | Sbjct 698 CCAAAACGTTAAAGCCAAAATTCAGGACAAAGAAGGAATCCCTCCTGAACAACAACGTTT 757 Query 115414 TATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAA 115473 || | ||| ||||||||||||||||||| | ||| || |||||||||||| ||||| Sbjct 758 GATATTTGCCGGCAAACAATTAGAAGATGGAAGAACATTGAGCGATTATAACATCCAAAA 817 Query 115474 AG 115475 || Sbjct 818 AG 819 >seq45910 Length=1805 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| | || || |||||| |||| || | ||| || |||||||||||| Sbjct 213 GACAAGGAAGGCATTCCTCCAGAACAGCAACGACTAATCTTTGCTGGAAAACAATTAGAA 272 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | ||| || |||||||||||||||||||| || |||| |||||||| Sbjct 273 GATGGAAGGACCTTGAGTGATTATAACATTCAAAAAGAAAGCACGCTACACTTGGTGTTG 332 Query 115499 AGATTGCGAGGAGGA 115513 | || ||||| ||| Sbjct 333 CGTTTACGAGGTGGA 347 >seq35091 Length=3122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 115294 TTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACACTGT 115353 ||| || || || | || || |||||||||||| | || || ||| |||||| | Sbjct 1071 TTTCGTGAAGACTTTGACCGGCAAAACCATTACCTTAGATGTTGAAGCCAACGACACGAT 1130 Query 115354 TGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACT 115413 | | || ||| ||||||| ||||| ||||| ||||| ||| || ||| | | Sbjct 1131 CCAAAATGTCAAAGCAAAAATTCAAGATAAGGAAGGAATCCCCCCTGAACAACAACGCTT 1190 Query 115414 TATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAA 115473 |||| ||| || |||||||| ||||| | | ||| | ||| || ||||||||||| Sbjct 1191 GATTTTTGCAGGAAAACAATTGGAAGACGGAAGAACTTTAAGCGACTACAACATTCAAAA 1250 Query 115474 AGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || |||| ||||||| | ||||| || || Sbjct 1251 AGAAAGCACGTTACACTTGGTGTTACGTTTGCGTGGTGG 1289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425080612241080