Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq19824 91.5 1e-13 seq48569 82.4 6e-11 >seq19824 Length=8713 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 || ||||| ||||| || || ||||| |||||||||||| || ||| | | || Sbjct 6347 CAATACCAAATGCAAGGTACTTTCTTTTTGGATGTTGTAGTCGCTCAAAGTTCTTCCATC 6406 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||| ||||||||||| ||| | || || || ||||| || || | || || ||||| Sbjct 6407 CTCTAATTGTTTGCCGGCAAAGATGAGACGTTGTTGCTCAGGCGGAATACCTTCCTTGTC 6466 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 |||| | ||| || | | |||||| ||| ||| |||| || ||||| Sbjct 6467 CTGGATTTTCGCCTTGACATTTTGGATGGTGTCGTTGGGTTCCACGTCCAACGTAATGGT 6526 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||||||| ||||| ||||| || ||||| Sbjct 6527 TTTTCCGGTCAAGGTTTTAACAAAGATTTGCAT 6559 >seq48569 Length=404 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||||| | || |||| ||||| ||| |||||||| ||||| || ||| | Sbjct 299 CCACCTCGTAAACGCAACACCAAATGCAAGGTGCTTTCCTTTTGGATGTTATAATCGATC 240 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||||||| ||||| ||| | || | |||||||| || ||| Sbjct 239 AGGGTGCAGCCATCCTCCAATTGCTTGCCGGCAAAGATTAATCGCTGTTGCTCAGGAGGA 180 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || | || || || || ||| ||||| | | |||||| ||||||| Sbjct 179 ATACCTTACTTATCCTGGATTTTGGCT--TTCACGTTTTGGATAGTGTCATTGGGCTCCA 122 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAA 16927 |||| |||||||||||||| |||| ||||| || ||| Sbjct 121 CATCCAACGTGATGGTTTTTCCAGTCAAAGTTTTCACGAAA 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404837155458910