Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq10537 127 3e-24 seq12010 116 5e-21 seq7650 114 2e-20 >seq10537 Length=5798 Score = 127 bits (140), Expect = 3e-24 Identities = 206/294 (70%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 63389 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| |||||||| || ||||| || |||||| ||||| | | |||||||| Sbjct 5382 TTTAATGTATCATAAATTCCCTCAATGGAATCATCTTTCATGGTCAACAGAAAACACGAC 5323 Query 63449 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCAT 63508 |||| ||| ||||| ||||| | || || || || || ||||| |||||||||||| Sbjct 5322 GACAGCTGGGGACGAGGTGTTCCTCCGTTGAACAACGTGGGCGAAGCATGAGTAAACCAT 5263 Query 63509 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCC 63567 |||| | | ||||||||||| || || || | ||| | ||| | || ||||| || Sbjct 5262 TTTTGACTCATCAGATTGTACGTTTCTATGGCAGCGTCCAAGTCCTCCATG-TGAATACC 5204 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63627 | | || ||||| | ||||||||| ||||| || | || | |||| ||| | Sbjct 5203 GAGGGACACTCGCATGAGCATGTGCTGTGGTCTCTCGGCAATTTCTCCATTTAATTTGAG 5144 Query 63628 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63681 |||||||||| || | ||||||| ||| || |||| || |||||| || Sbjct 5143 CAAGTAGGATCGCTCAAGCGTTTTAATACCGAAGTAGTCATAATCAAAGTCCCG 5090 >seq12010 Length=13650 Score = 116 bits (128), Expect = 5e-21 Identities = 305/461 (66%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 32351 TTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTT 32410 ||| |||||||| || |||| ||||| || || | | |||| ||||| || | || Sbjct 5328 TTGTGACATAACACCAGCTTTTGCATATTCTCCAACTCTTCTTTCAAAAAAGTTCGCCTT 5387 Query 32411 ACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAttttttt 32470 ||||| || ||||| ||||||| | || || ||||||| ||| ||| | ||||| Sbjct 5388 ACCTTGCAAGGATATCATTTCCATCCATTCAAAGGGATTGGCAACTTTAAATATTTTGGG 5447 Query 32471 AAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTC 32530 | || || || || || |||||| || |||||||| || ||| ||| ||| Sbjct 5448 ATGCCCTAAAGCATGAAGCAGTCTATCGGCAACAAATTCAATGTATTGAGACATTCGTTC 5507 Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAA----TTCTTGTTCAA 32586 | |||||||| || || || ||||| || || || | ||| |||| | || Sbjct 5508 AGCGTTCATTCCAATCAGATTGACTGGCAGTGCATCACACACAAACGTTTTCTCG--CAT 5565 Query 32587 TAGAGACCGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAA 32644 | | | || ||| | | ||| || | || |||| || || ||| || | Sbjct 5566 TTCA--CTGCATCTCTAACAATT--TCGTGAACAATTTCGTCTTTCAACTGATTCACGCA 5621 Query 32645 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 32704 | ||| || ||| |||||||| ||| | || ||||| | |||||||| ||| Sbjct 5622 CTCCCGGTACAGCAGACAAGCGAAATCAGTGTGCAATCCTTCGTCACGACTAATTAGTTC 5681 Query 32705 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 32764 ||| |||||| || || ||||| | |||||||| || ||||||||||| | ||| Sbjct 5682 ATTGCTAAACGTAAGGCCTGGCATCAAACCACGCTTCTTTAGCCAAAATATTGCACAAAA 5741 Query 32765 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805 |||||| || || ||||| ||||| |||| | |||| Sbjct 5742 TGATCCGCTGAAAAATATTCCCTCTACACACGCATAAGCAA 5782 >seq7650 Length=7814 Score = 114 bits (126), Expect = 2e-20 Identities = 193/277 (70%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 63394 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 63453 ||||||||| || || || || |||||| ||||| | | || ||||| || | Sbjct 3826 CGTATCATAAATTCCTTCAATGGAATCATCTTTCATGGTGATAAGGAAACAAGAGGATAG 3885 Query 63454 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTC 63513 ||| ||||| || || ||| |||| || || || |||||| |||||||||||| Sbjct 3886 TTGCGGACGAGGCGTGCCACTATTGAATAGTGTGGGTGATGCGTGAATAAACCATTTTTG 3945 Query 63514 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTG 63572 | | | ||||||||| |||||||| | || | ||| | || || || || | | Sbjct 3946 ACTCATCAAATTGTACGTTTCAATAGCGGCATCCACGTCCTCCATG-TGTATACCCAGCG 4004 Query 63573 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63632 |||||||||||||||||||| ||||| || | || || || | ||||||||| | Sbjct 4005 ACACACGCATTAACATGTGCTGCGGTCTCTCTGCTATTTTACCATTGACTTTCAACAAAT 4064 Query 63633 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 | ||| | |||| || || | ||||||||| | ||| Sbjct 4065 ACGATCTCTCCAGTGTCTTTACACCAAAATAATCGTA 4101 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||| ||||| | ||| ||| | ||| || || ||||| |||||||||||||| || Sbjct 1915 GTGAATTTAATGGCATCGGTTGCAGCTTTTGTGCGCAGATAATACATTCCCGTTTTAAGT 1974 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || ||| || ||||| ||||| || | ||| | || | | | || Sbjct 1975 CCCTTTTCCCAGCCATAAAAGTGCATGGACGACAATTTACCAAAATTGGCGCCCATCATG 2034 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || |||| |||||| |||||| || || ||||| | || |||||||| | || Sbjct 2035 TGTATGTTCAGCGATTGAGATTGATCAATAAACGCTCCGCGATCGGCAGCCATATCAATG 2094 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 62064 || || ||||| | ||||||||| | |||||||| Sbjct 2095 ATTGTTTTTTGAGAAATTTCCCACACCGTTTTATA 2129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633229572396400