Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq19824 113 4e-20 seq50756 96.9 3e-15 seq35091 91.5 1e-13 seq21059 87.8 2e-12 seq49792 84.2 2e-11 seq19166 82.4 6e-11 >seq19824 Length=8713 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| ||||||| ||||||||||| |||| |||||||| | Sbjct 6559 ATGCAAATCTTTGTTAAAACCTTGACCGGAAAAACCATTACGTTGGACGTGGAACCCAAC 6500 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | || || ||||| ||||| ||||| |||| || ||| Sbjct 6499 GACACCATCCAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGAGCAA 6440 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || || | ||| ||||||||||| || ||| | |||| || ||| || || Sbjct 6439 CAACGTCTCATCTTTGCCGGCAAACAATTAGAGGATGGAAGAACTTTGAGCGACTACAAC 6380 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||| ||| | ||||| || |||||| |||| ||||| Sbjct 6379 ATCCAAAAAGAAAGTACCTTGCATTTGGTATTGCGTTTGCGTGGTGG 6333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 111196 TTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTT 111255 ||||| || || | ||||| ||||||||||| |||| |||||||| |||| | | Sbjct 7379 TTTGTGAAGACTTTAACCGGAAAAACCATTACGTTGGATGTGGAACCCAACGATACAATC 7320 Query 111256 GGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTT 111315 | || ||| |||||| || ||||| || |||| || |||||| | || Sbjct 7319 CAAAACGTGAAAGCCAAAATTCAGGATAAAGAGGGAATTCCTCCAGAGCAACAACGTCTG 7260 Query 111316 ATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAA 111375 || | ||| || || ||||||||||| | ||| || ||| ||||| || ||||| Sbjct 7259 ATCTTTGCAGGAAAGCAATTGGAAGACGGTCGCACTTTGAGCGACTATAACATCCAAAAG 7200 Query 111376 GAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || | ||||| ||||||||| | || ||||| Sbjct 7199 GAAAGCACCTTGCATTTGGTGTTGCGTTTACGTGGTGG 7162 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 111196 TTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTT 111255 |||||||| || ||||||| ||||||||||| |||| |||||||| |||| | | Sbjct 7076 TTTGTCAAGACATTGACCGGAAAAACCATTACGTTGGATGTGGAACCCAACGATACAATC 7017 Query 111256 GGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTT 111315 | || ||| |||||| || || ||||| | ||| || |||||| | | Sbjct 7016 CAAAACGTGAAAGCCAAAATTCAAGATAAGGAAGGAATCCCCCCTGAGCAACAACGTTTG 6957 Query 111316 ATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAA 111375 || | || ||||| |||||||| ||| ||| || ||||||||| || ||||| Sbjct 6956 ATCTTCGCCGGCAAGCAATTGGAGGATGGCCGCACTTTGAGCGATTATAACATCCAAAAG 6897 Query 111376 GAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || | ||||| ||| |||| | || ||||| Sbjct 6896 GAAAGCACTTTGCATTTGGTGCTGCGATTACGTGGTGG 6859 >seq50756 Length=522 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 111196 TTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTT 111255 ||||| ||||| | || || ||||| || || |||| |||||||| |||| || | Sbjct 393 TTTGTGAAAACCTTAACTGGAAAAACTATCACGTTGGATGTGGAACCCAACGATACTATC 334 Query 111256 GGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTT 111315 | |||||| |||||| || || |||||| |||| || || ||| | | Sbjct 333 CAAAACGTAAAAGCCAAAATTCAGGATAATGAAGGCATTCCTCATGAACAGCAACGTTTG 274 Query 111316 ATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAA 111375 |||| ||| |||||||||||||| || | ||| || ||||||||| || |||||| Sbjct 273 ATTTTTGCCGGCAAACAATTGGATGACGGTCGTACTTTGAGCGATTATAACATTCAAAAA 214 Query 111376 GAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || | ||||| || |||||| | || ||||| Sbjct 213 GAAAGCACCTTGCATTTGGTCTTGCGTTTACGAGGTGG 176 >seq35091 Length=3122 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 111195 TTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGT 111254 ||| || || || |||||||||||||||||||| | || ||| ||| ||| | | Sbjct 1071 TTTCGTGAAGACTTTGACCGGCAAAACCATTACCTTAGATGTTGAAGCCAACGACACGAT 1130 Query 111255 TGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCT 111314 | || ||| ||||||| || || ||||| | ||| || |||||| | | Sbjct 1131 CCAAAATGTCAAAGCAAAAATTCAAGATAAGGAAGGAATCCCCCCTGAACAACAACGCTT 1190 Query 111315 TATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAA 111374 |||| ||| || |||||||||||||| | |||| | ||| || || || ||||| Sbjct 1191 GATTTTTGCAGGAAAACAATTGGAAGACGGAAGAACTTTAAGCGACTACAACATTCAAAA 1250 Query 111375 AGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 |||| || |||| || ||||| ||| |||| |||||| Sbjct 1251 AGAAAGCACGTTACACTTGGTGTTACGTTTGCGTGGTGGC 1290 >seq21059 Length=25508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 || |||||| | | || | ||| ||||| |||||||||||| | ||| || |||| Sbjct 22895 GAACAACAACGATTAATATTTGCTGGCAAGCAATTGGAAGATGGAAGGACTTTGAGCGAT 22836 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||||||| ||||| ||||||||||||||| |||| ||||| Sbjct 22835 TACAACATTCAAAAAGAAAGCACACTGCATTTAGTGTTGCGTTTGCGTGGTGG 22783 >seq49792 Length=5355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 111196 TTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTT 111255 ||||| || || |||| ||||||||||| ||| | || || |||| ||| | | Sbjct 233 TTTGTGAAGACATTGACGGGCAAAACCATAACCTTAGACGTTGAGCCCAATGATACAATC 292 Query 111256 GGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTT 111315 | || || ||| || ||||| |||||| |||| || |||||| | | Sbjct 293 CAAAACGTTAAGGCAAAGATCCAAGACAAGGAAGGCATTCCACCAGAGCAACAACGATTA 352 Query 111316 ATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAA 111375 || | ||| || ||||| ||||||||| | |||| || |||||| || || ||||| Sbjct 353 ATCTTTGCTGGAAAACAGTTGGAAGATGGAAGAACTTTGAGCGATTACAACATCCAAAAG 412 Query 111376 GAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 ||| || | |||||||| |||||| | ||||||||| Sbjct 413 GAAAGCACGTTGCATTTAGTATTGCGTTTACGCGGTGGC 451 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 111195 TTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGT 111254 ||| || || || ||||||||||||| |||||| | || || |||| ||| | | Sbjct 844 TTTCGTGAAGACTTTGACCGGCAAAACTATTACCTTAGATGTCGAGCCCAACGACACGAT 903 Query 111255 TGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCT 111314 | ||||| |||||| ||||| ||||| | || || |||||| | | Sbjct 904 CCAAAACGTAAAGGCGAAAATTCAAGACAAGGAAGGAATCCCTCCTGAACAACAACGCTT 963 Query 111315 TATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAA 111374 |||| ||| || |||||||| |||||| ||| | ||| || || || ||||| Sbjct 964 GATTTTTGCAGGAAAACAATTAGAAGATGGCCGCACTTTAAGCGACTACAACATTCAAAA 1023 Query 111375 AGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 |||| || ||||||| ||||| ||| ||||||||||| Sbjct 1024 AGAAAGCACGTTACATTTGGTGTTACGTTTGCGCGGTGGC 1063 >seq19166 Length=5045 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||| ||||| | ||| || |||||| | || |||| ||| || |||||||||||| Sbjct 4884 GACAAGGAAGGAATCCCCCCTGAACAACAACGCCTGATTTTTGCAGGAAAACAATTGGAA 4825 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| | |||| | ||| || || || ||||||||| || |||| || ||||| Sbjct 4824 GATGGAAGAACTTTAAGCGACTACAACATTCAAAAAGAAAGCACGTTACACTTGGTGTTA 4765 Query 111400 CGTCTGCGCGGTGGC 111414 ||| |||| |||||| Sbjct 4764 CGTTTGCGTGGTGGC 4750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422778038957800