Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq45780 96.9 3e-15 seq40838 95.1 1e-14 seq49792 93.3 4e-14 seq19824 93.3 4e-14 seq40549 91.5 1e-13 seq28421 91.5 1e-13 seq35349 89.7 5e-13 seq35091 87.8 2e-12 seq45884 86.0 6e-12 seq29645 86.0 6e-12 >seq45780 Length=809 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 ||| |||||||| |||||||| | ||||| ||||||| | |||||||| || | Sbjct 566 TTCCTTTTGAATATTGTAATCGCTCAATGTGCGACCGTCTTCCAATTGCTTGCCAGCGAA 625 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 ||| | ||||| || || |||||||| |||||||| || || ||||| ||| ||| Sbjct 626 AATCAATCGCTGTTGCTCAGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTAACATT 685 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 | | ||||| | || || || | |||| |||||||||||||| ||||| || Sbjct 686 TTGGATAGTATCGTTAGGCTCTACGTCCAACGTTATCGTCTTGCCGGTCAAGGTTTTCAC 745 Query 64432 GAA 64434 ||| Sbjct 746 GAA 748 >seq40838 Length=12235 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||||| || | ||| ||||||||||||||||||||| | ||||| | ||||| Sbjct 3765 CACTAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAATCGCTTAAAGTGCGACCATCTTC 3824 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | || || || || | || | || || || || ||||| |||||||| |||||||| Sbjct 3825 CAATTGTTTTCCTGCGAAGATCAAGCGTTGTTGTTCAGGAGGGATTCCTTCCTTTTCTTG 3884 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| ||| || | | ||| ||| || || || |||| || | ||| || Sbjct 3885 AATTTTTGCCTTAACGTTTTGGATTGTGTCATTGGGCTCGACATCTAATGTAATGGTTTT 3944 Query 64414 GCCGGTCAAAGTTTTTACGAAA 64435 |||||||||||| || || ||| Sbjct 3945 GCCGGTCAAAGTCTTCACAAAA 3966 >seq49792 Length=5355 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || |||||||| | | ||| | ||| | ||| |||||||||||||||||| || Sbjct 1062 CCACCGCGCAAACGTAACACCAAATGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCTT 1003 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| | || || || ||| |||| | || || || || ||||| Sbjct 1002 AAAGTGCGGCCATCTTCTAATTGTTTTCCTGCAAAAATCAAGCGTTGTTGTTCAGGAGGG 943 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || ||||| ||||| |||||| | | || || || || || Sbjct 942 ATTCCTTCCTTGTCTTGAATTTTCGCCTTTACGTTTTGGATCGTGTCGTTGGGCTCGACA 883 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 |||| || | || |||||||||||||| || |||||| Sbjct 882 TCTAAGGTAATAGTTTTGCCGGTCAAAGTCTTCACGAAA 844 >seq19824 Length=8713 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | ||||| | ||| | || ||| ||||||||||| ||||| Sbjct 6563 ACCACCTCGTAAACGCAGCACCAAATGTAAGGTGCTTTCCTTTTGAATGTTATAATCGCT 6622 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| | || || || ||| | || | || || || || ||||| Sbjct 6623 CAAAGTGCGACCGTCTTCTAATTGTTTTCCTGCAAAGATTAATCGTTGTTGTTCAGGAGG 6682 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| |||||| ||| || | | |||||| || ||||| Sbjct 6683 AATGCCTTCCTTGTCTTGGATTTTTGCCTTCACGTTTTGAATTGTATCGTTGGGTTCCAC 6742 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 || | || | ||| || |||||||||||||| ||||| Sbjct 6743 ATCCAACGTGATGGTTTTTCCGGTCAAAGTTTTCACGAA 6781 >seq40549 Length=748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 ||| |||||||||||||| || | ||||| ||||||| | |||||||| || | Sbjct 320 TTCCTTTTGAATGTTGTAGTCGCTCAATGTGCGACCGTCTTCCAATTGCTTGCCAGCGAA 261 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAA 64370 ||| | ||||| || || |||||||| |||||||| || || | |||| ||||| ||| Sbjct 260 AATCAATCGCTGTTGCTCAGGAGGAATGCCTTCTTTATCCTG-AATTTTGGCTTTAACAT 202 Query 64371 CCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTA 64430 | | ||||| || || || || | || | ||||| |||||||| ||||| | Sbjct 201 TTTGGATAGTATCGTTGGGCTCTACGTCCAACGTGATCGTCTTACCGGTCAAGGTTTTCA 142 Query 64431 CGAA 64434 |||| Sbjct 141 CGAA 138 >seq28421 Length=944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||||| || | ||| ||||||||||||||||||| | | ||||| | ||||| Sbjct 9 CACTAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAACCGCTTAAAGTGCGACCATCTTC 68 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | || || || || | || | || || || || ||||| |||||||| |||||||| Sbjct 69 CAATTGTTTTCCTGCGAAGATCAAGCGTTGTTGTTCAGGAGGGATTCCTTCCTTTTCTTG 128 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| ||| || | | ||| ||| || || || |||| || | ||| || Sbjct 129 AATTTTTGCCTTAACGTTTTGGATTGTGTCATTGGGCTCGACATCTAATGTAATGGTTTT 188 Query 64414 GCCGGTCAAAGTTTTTACGAAAATT 64438 |||||||||||| || || |||||| Sbjct 189 GCCGGTCAAAGTCTTCAC-AAAATT 212 >seq35349 Length=2359 Score = 89.7 bits (98), Expect = 5e-13 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 64223 CGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTG 64282 ||||| | || || | ||| | ||| ||| ||||| ||||||||||| | ||| Sbjct 1144 CGCAAACGGAGAACCAAATGCAGCGTGCTTTCCTTTTGGATGTTGTAATCACTCAAAGTG 1085 Query 64283 CGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || ||||||||| ||||| | ||| | || || || ||||| || |||||||| ||| Sbjct 1084 CGGCCGTCTTCAAATTGCTTTTCCGCAAAGATCAGACGTTGCTGTTCAGGAGGAATACCT 1025 Query 64343 TCTTTTTCTTGTATTTTTTGCTTT 64366 ||||| ||||| | |||||||||| Sbjct 1024 TCTTTGTCTTGGA-TTTTTGCTTT 1002 >seq35091 Length=3122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 |||||||||||||||||| || | || | ||||||| | || || || ||| | Sbjct 1254 TTCTTTTTGAATGTTGTAGTCGCTTAAAGTTCTTCCGTCTTCCAATTGTTTTCCTGCAAA 1195 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAA 64370 ||| | || || || || || || |||||||| || ||||| | |||||||||| ||| Sbjct 1194 AATCAAGCGTTGTTGTTCAGGGGGGATTCCTTCCTTATCTTG-AATTTTTGCTTTGACAT 1136 Query 64371 CCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTA 64430 | | || || ||| || || |||| || | ||| |||||||||||||| || | Sbjct 1135 TTTGGATCGTGTCGTTGGCTTCAACATCTAAGGTAATGGTTTTGCCGGTCAAAGTCTTCA 1076 Query 64431 CGAAA 64435 ||||| Sbjct 1075 CGAAA 1071 >seq45884 Length=997 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 64223 CGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTG 64282 ||||| | || || | ||| | ||| ||| ||||| ||||||||||| | ||| Sbjct 934 CGCAAACGGAGAACCAAATGTAACGTGCTTTCCTTTTGGATGTTGTAATCACTCAAAGTG 875 Query 64283 CGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || |||||||| ||||| || ||| | || || || ||||| || |||||||| ||| Sbjct 874 CGACTGTCTTCAAATTGCTTTCCCGCAAAGATCAGACGTTGCTGTTCAGGAGGAATACCT 815 Query 64343 TCTTTTTCTTGTATTTTTTGCTTT 64366 ||||| ||||| | | |||||||| Sbjct 814 TCTTTGTCTTGGA-TCTTTGCTTT 792 >seq29645 Length=800 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 64279 GGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338 |||||| |||||| | || ||||| || |||| | ||||| || || |||||||| Sbjct 572 GGTGCGGCCGTCTTACAATTGTTTGCCAGCGAAAATCAATCGCTGTTGCTCTGGAGGAAT 631 Query 64339 TCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTC 64398 |||||| || || || |||||| ||||| | | ||||| ||| || || || Sbjct 632 TCCTTCATTATCCTGAATTTTTGCATTTACGTTTTGGATAGTATCGTTGGCCTCTACATC 691 Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || | |||||||||||||| |||||||||||| Sbjct 692 CAACGTGATTGTCTTGCCGGTCAATGTTTTTACGAAA 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499327469341960