Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq146 95.1 1e-14 >seq146 Length=10098 Score = 95.1 bits (104), Expect = 1e-14 Identities = 312/476 (66%), Gaps = 8/476 (2%) Strand=Plus/Plus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||||||||| || || |||| ||| ||||| ||||||| | | |||||| | Sbjct 8818 CCCACATATCAAATTGCAGCTCTCCTTTGGAAGCTGGTGATCCCTTGTACGACTCATA-G 8876 Query 116123 GGCCCTCAACCT--CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 116180 ||||| ||| | |||||||||| | ||| | ||| | || || | ||| Sbjct 8877 GGCCCA-AACTTTTCCGCCAATTCACAAGAAGCCGACACTGCTCCAAAGTAAATGGCCTC 8935 Query 116181 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAA 116239 ||| || | |||| | ||| || | | ||||| | | | ||| || || Sbjct 8936 AAAGATTTCACGGTTCAATTGAAGGGCATCTTTGCTTTCAAAGGGCA-ATTGCATCAGAA 8994 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 | || ||||| || | || || ||||| | ||||||||| || ||| ||| ||| ||| Sbjct 8995 TGAACACATCGGCCAAGCCCTGCACACCAATGCCAATTGGTCGGTGTTTCAAATTGGACA 9054 Query 116300 T-TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 116358 ||| | | || ||||||||||| ||| || || || | || | || || || Sbjct 9055 CCTCGGCCTCTTTC-ACGGGATAAAAGTTCACGTCAATCACTTTGTTCAAGTTCTTTGTC 9113 Query 116359 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 116418 || || || || | ||| || || || | || || ||||| ||| | ||| ||| Sbjct 9114 ACTACTTTGGTCACTTCGACCAGTTTCTCCAAGTCGAACTTGCGACTCTTTGCATCCACA 9173 Query 116419 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 116478 | ||||| || || || ||||||| || ||||| | | || || | |||||| Sbjct 9174 AATTTAGGCAGAGCAATCGACGCCAAGTTGCACACCGCGACTTCGTCTGGAGATGTGTAC 9233 Query 116479 TCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 || | || || || ||||| || || ||| || || |||||||| ||||| || Sbjct 9234 TCCACTATCTCGGTGCACAAGTTCGATGACTTTATCGTACCCAAGTTTTTTTGGTT 9289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613117553908440