Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq19824 127 2e-24 seq35091 102 9e-17 seq11259 100 3e-16 seq19397 98.7 1e-15 seq48569 96.9 4e-15 seq27925 95.1 1e-14 seq38859 93.3 5e-14 seq45780 91.5 2e-13 seq32733 89.7 6e-13 seq45884 86.0 7e-12 >seq19824 Length=8713 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 |||||||| |||| |||||| ||||| || |||||||| ||||||||| | ||| | Sbjct 6342 AAACGCAATACCAAATGCAAGGTACTTTCTTTTTGGATGTTGTAGTCGCTCAAAGTTCTT 6401 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || || | || |||||||| || || | || || || || | ||| | | ||| Sbjct 6402 CCATCCTCTAATTGTTTGCCGGCAAAGATGAGACGTTGTTGCTCAGGCGGAATACCTTCC 6461 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 |||||| ||| ||| ||||| | | |||||| | | |||||| |||| ||| Sbjct 6462 TTGTCCTGGATTTTCGCCTTGACATTTTGGATGGTGTCGTTGGGTTCCACGTCCAACGTA 6521 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || |||| |||||||||||||||||||| Sbjct 6522 ATGGTTTTTCCGGTCAAGGTTTTAACAAAGATTTGCAT 6559 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || |||||||| ||||||||||||| |||||| || ||||| |||||||| ||||| Sbjct 6095 TTAGTTTCCTCCTCTCAAACGCAACACCAAATGCAAAGTGCTCTCTTTTTGGATGTTGTA 6154 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| | |||||| | || || | || || || || || || || || || || || Sbjct 6155 GTCACTCAAAGTGCGGCCATCCTCCAATTGTTTTCCCGCAAAAATTAAACGTTGTTGCTC 6214 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | | ||||| || || || |||| || | |||||| | | Sbjct 6215 TGGAGGAATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTCTGGATGGTGTCGTTGGG 6274 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || |||| ||| || ||||| || |||| || ||||| ||||||||||| Sbjct 6275 TTCAACGTCCAACGTAATTGTTTTTCCAGTCAAAGTCTTAACGAAGATTTGCAT 6328 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/243 (69%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| |||||||| ||||| ||| || || || |||||||| || || || ||| Sbjct 6564 CCACCTCGTAAACGCAGCACCAAATGTAAGGTGCTTTCCTTTTGAATGTTATAATCGCTC 6623 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| |||| || | || || || || || || || || || || || | || Sbjct 6624 AAAGTGCGACCGTCTTCTAATTGTTTTCCTGCAAAGATTAATCGTTGTTGTTCAGGAGGA 6683 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| ||| || ||| | | | || ||| | | ||||||| Sbjct 6684 ATGCCTTCCTTGTCTTGGATTTTTGCCTTCACGTTTTGAATTGTATCGTTGGGTTCCACA 6743 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCACAAACAA 46606 |||| |||||||||||| || |||| ||||| || || || ||| ||||||||| Sbjct 6744 TCCAACGTGATGGTTTTTCCGGTCAAAGTTTTCACGAA-----GCTGTTTTCACAAACAA 6798 Query 46607 CAC 46609 || Sbjct 6799 AAC 6801 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | |||||||||||||| |||||| || || ||||||||||| || |||||| Sbjct 7162 CCACCACGTAAACGCAACACCAAATGCAAGGTGCTTTCCTTTTGGATGTTATAGTCGCTC 7221 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | |||||| |||| || | ||||| || || || |||| || || || || | || Sbjct 7222 AAAGTGCGACCGTCTTCCAATTGCTTTCCTGCAAAGATCAGACGTTGTTGCTCTGGAGGA 7281 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 46545 | | ||| || ||| ||| || ||| || | | || ||| | | |||||| Sbjct 7282 ATTCCCTCTTTATCC-TGAATTTTGGCTTTCACGTTTTGGATTGTATCGTTGGGTTCCAC 7340 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 ||||| ||| |||||||| || || | || || |||||| Sbjct 7341 ATCCAACGTAATGGTTTTTCCGGTTAAAGTCTTCACAAAG 7380 >seq35091 Length=3122 Score = 102 bits (112), Expect = 9e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| ||| ||||| |||| |||||||||||| ||||||||||| || ||||| | Sbjct 307 CCGCCTCGTAATCGCAATACCAAATGCAATGTACTTTCCTTTTGGATGTTATAGTCACTT 248 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || |||| || | || || ||||| || ||||| || ||||| || | || Sbjct 247 AAGGTTCGGCCGTCCTCTAATTGTTTTCCGGCAAAGATCAATCGTTGCTGCTCTGGTGGG 188 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||||| | ||| || ||| || || | ||||||| | | || || Sbjct 187 ATGCCTTCCTTGT-CTTGAATTTTGGCTTTCACGTTCTGGATCGTGTCGTTAGGCTCGAC 129 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 |||| ||| || ||||| || |||| ||||| || ||| Sbjct 128 GTCCAACGTTATTGTTTTTCCGGTCAAGGTTTTTACGAAG 89 >seq11259 Length=23860 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| ||||||||| |||| |||||| ||||| || |||||||| |||||||| Sbjct 23643 CCACCTCGTAAACGCAAAACCAAATGCAAAGTACTTTCTTTTTGGATGTTGTAGTCACTC 23702 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | ||||| || ||||| ||||| || || || || | || Sbjct 23703 AAGGTACGGCCATCTTCCAATTGCTTTCCTGCGAAGATCAAACGTTGTTGCTCAGGGGGA 23762 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| ||| || || | | | |||||| | | ||||||| Sbjct 23763 ATACCTTCCTTATCCTGGATTTTGGCTTTCACATTTTGGATGGTGTCGTTAGGTTCCACA 23822 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAA 46584 |||| |||||| ||||| || |||| ||||| ||||| Sbjct 23823 TCCAACGTGATTGTTTTTCCGGTCAAAGTTTTGACAAA 23860 >seq19397 Length=4183 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| ||||||||||||| |||||| || || || |||||||| ||||| ||| Sbjct 4117 CCACCTCGCAAACGCAACACCAAATGCAAGGTGCTTTCTTTTTGGATGTTGTAATCGCTC 4058 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || |||| || | ||||||||||| || ||||| || || || || | || Sbjct 4057 AAAGTTCGGCCGTCCTCCAATTGCTTGCCGGCAAAGATCAAACGTTGTTGCTCAGGGGGA 3998 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| || ||| |||| | | |||||| | | || ||| Sbjct 3997 ATTCCTTCCTTGTCCTGAATTTTCGCTTTGACGTTTTGGATGGTGTCGTTGGGCTCAACA 3938 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 |||| ||| || ||||| || |||| || || || ||| Sbjct 3937 TCCAACGTAATTGTTTTTCCAGTCAAAGTCTTCACGAAG 3899 >seq48569 Length=404 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| |||||||||||||| |||||| || || ||||||||||| || || ||| Sbjct 299 CCACCTCGTAAACGCAACACCAAATGCAAGGTGCTTTCCTTTTGGATGTTATAATCGATC 240 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||| | || || | ||||||||||| || || || ||||| || || | || Sbjct 239 AGGGTGCAGCCATCCTCCAATTGCTTGCCGGCAAAGATTAATCGCTGTTGCTCAGGAGGA 180 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | | ||| ||| ||| || || | | | ||||| | | |||||| Sbjct 179 ATACCTTACTTATCCTGGATTTTGGCTTTCACGTTTTGGATAGTGTCATTGGGCTCCACA 120 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAA 46584 |||| |||||||||||| || |||| ||||| || || Sbjct 119 TCCAACGTGATGGTTTTTCCAGTCAAAGTTTTCACGAA 82 >seq27925 Length=8008 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| |||| ||| ||||| |||| |||||||| || ||||||||||| ||||| || Sbjct 7928 GCCGCCTCGTAATCGCAATACCAAGTGCAATGTGCTTTCCTTTTGGATGTTGTAATCACT 7869 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 | || || | || || | ||||| ||||| || ||||| || ||||| || | || Sbjct 7868 CAAGGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGCTCTGGTGG 7809 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || |||||||| ||| || ||| | || | ||||||| | | || || Sbjct 7808 AATGCCTTCCTTGTCTTGGATTTTGGCCTTCACGTTCTGGATCGTGTCGTTGGCCTCGAC 7749 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 |||| |||||| ||||| || || | ||||| || ||| Sbjct 7748 GTCCAACGTGATTGTTTTTCCAGTTAAGGTTTTCACGAAG 7709 >seq38859 Length=993 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | |||||||||||||| |||||| || || ||||||||||||||||| || Sbjct 850 CCACCGCGTAAACGCAACACCAAATGCAACGTGCTTTCCTTTTGGATATTGTAATCACTC 791 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | | || || | ||||| || || || || |||||||| || || | || Sbjct 790 AAGGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAGATTAAGCGCTGTTGCTCTGGTGGA 731 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| |||||| ||||| | | |||||| | | || || Sbjct 730 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTTTGGATCGTGTCATTGGGCTCAACG 671 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | || ||||||||||| ||||| || || || ||| | | | ||||| Sbjct 670 TCTAAGGTAATGGTTTTGCCGGTCAGGGTCTTCACGAAGCTATACGTTTTG 620 >seq45780 Length=809 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||||||||||||| || | ||| || ||||| |||||||| |||||||| ||| Sbjct 531 CCACCTCTTAAACGCAAGACTAAATGTAAAGTACTTTCCTTTTGAATATTGTAATCGCTC 590 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 | ||||| |||| || | |||||||| ||||| ||||| ||||| || || Sbjct 591 AATGTGCGACCGTCTTCCAATTGCTTGCCAGCGAAAATCAATCGCTGTTGCTC 643 >seq32733 Length=1362 Score = 89.7 bits (98), Expect = 6e-13 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 46366 GCCTCCTCT--TAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 ||| ||||| |||||||||||| | ||||| || || | |||||| || || || ||| Sbjct 274 GCCACCTCTCGTAAACGCAACACTAAGTGCAAGGTGCTTTTCTTTTGAATGTTATAATCG 215 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 | ||| || |||| || | ||||||| ||| || ||||| | || || || | Sbjct 214 CTCAAAGTTCGGCCGTCTTCCAATTGCTTGCAGGCAAAGATCAAATGTTGTTGCTCTGGG 155 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTC-TTGAGCGTCGCCACCGTGTCGCTCGATTC 46542 || | | || |||||| ||| || | | |||| | | ||||| | | || Sbjct 154 GGAATTCCTTCATTGTCC-TGAATTTTTGCTTTGACGTTTTGGATGGTGTCATTGGGCTC 96 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAA 46584 |||||||| |||||||||||| ||||||| ||||| ||||| Sbjct 95 CACATCCAACGTGATGGTTTTTCCCGTCAAAGTTTTCACAAA 54 >seq45884 Length=997 Score = 86.0 bits (94), Expect = 7e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||| | |||| ||| || || || ||||||||||| ||||| || | |||||| Sbjct 931 AAACGGAGAACCAAATGTAACGTGCTTTCCTTTTGGATGTTGTAATCACTCAAAGTGCGA 872 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 ||| || | ||||| || || || |||| || ||||| || | || | | || Sbjct 871 CTGTCTTCAAATTGCTTTCCCGCAAAGATCAGACGTTGCTGTTCAGGAGGAATACCTTCT 812 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTC---GCCACCGTGTCGCTCGATTCCACATCCACC 46552 ||||| |||||| |||| ||| | | || ||| | | ||||||||||| | Sbjct 811 TTGTCTTGGATCTTTGCTTTGA-CGTTTTTGATAGTGTCTCGTTGGGTTCCACATCCAAC 753 Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 || |||||||| ||||||| ||||| |||||| Sbjct 752 GTAATGGTTTTTCCCGTCAAAGTTTTCACAAAG 720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564879410026680