Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq39255 197 1e-44 seq26427 132 4e-25 seq9962 125 5e-23 seq1205 125 5e-23 seq2606 113 3e-19 seq23503 109 4e-18 seq25151 105 5e-17 seq18966 87.8 1e-11 >seq39255 Length=1009 Score = 197 bits (218), Expect = 1e-44 Identities = 668/1021 (65%), Gaps = 42/1021 (4%) Strand=Plus/Minus Query 517419 CAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGT 517478 ||| ||||||| | | |||| | || ||| | || | || | |||||||||||||| | Sbjct 1009 CAGATTGATTACCAGCATAAATGGTGAATGTTTCGGTTCTTCTGCAAGGAATTGTTGTAT 950 Query 517479 TTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAG 517538 ||| | ||| || || ||||| | |||||| || ||||| | || | || | || Sbjct 949 TTCGAGGAATCATTTTTGTCATCACACCACCCGCAGTTTCAATTCCCAATGACAATGGCA 890 Query 517539 TGACATC--AACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACA---AGAAT 517593 | ||| || || |||| | || || || ||| | |||| | | ||| Sbjct 889 TAACACAGAAAATACAACAAAAA----AAATTGTTG-TCATTCACACCATTAGTCAAAAT 835 Query 517594 AGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAG 517653 |||||| | || ||||||| ||||||| ||||||||||||||| | | | | || Sbjct 834 TTGAGCTTGAGTCGCTGCACCATGTGCAACAACTTCATCAGGATTAATACTGTTACAAAG 775 Query 517654 TTTTTTACCATTGAAAAAAT--TTGAAAGAAGTTGTCTT----ACCTTAGGAATACGAGA 517707 || ||| ||||| || | | |||| | |||| | || |||||||||| Sbjct 774 TTCTTTTCCATTAAAGTATTCCTTGA------TCATCTTTTGCAATTTTGGAATACGAGT 721 Query 517708 TGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAA 517767 |||||| ||| ||||||||| |||| | | |||| | | | | ||| || Sbjct 720 TGATCCACCAGATAATACAATATCATCAATATCCAATTTGCCTATTCCAGTATCTTGCAA 661 Query 517768 AACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC-AAGTC-TGAACAAAGTTCTTCGAAT 517825 | |||| | | |||| | | | || ||| | || |||| |||||| ||| Sbjct 660 TATTTTTGCGATATAATCAAAGCAGTCACGGAAGTAAGGCATGCACAA--TTCTTCAAAT 603 Query 517826 TTAGCTCTAGTAAGAGTGACATT-ATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 || ||| || | | | || | ||||||| ||||| | | |||| | ||| || Sbjct 602 TTGGCTTGTGTGATCGA-AGATACAAAATCAATGCCTTCATGAAGACAATCTATTTCTAT 544 Query 517885 CGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCT 517944 || | | |||| | |||| || || ||||| ||||| |||||| | ||||||| Sbjct 543 AGTTGCTCGAGTTGCAGAACTTAATGTTCGTTTTGCACGCTCACATTGTAATTTTAGTCT 484 Query 517945 TCGTAAGGCTTTTGCTGATT--GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCA 518002 | | ||| | || ||| | | | ||| ||||| ||| | || || || ||| Sbjct 483 TTTCATTGCTAT--CTTATTTTGGGTAATATCAAGTTTATGCTTTTTTTTAAATTCATCA 426 Query 518003 ACACACCATGTTAC-AAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGA 518061 || | |||| | || | | |||||||||||||||||||| || ||||| | || | Sbjct 425 GCAAAAAATGTCAATAATATG-TTATCAAAATCTTCACCTCCTAAATTAGTGTCACCAGC 367 Query 518062 CGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCC 518121 || || | |||| || | |||||| |||| ||||| | || ||||| | || Sbjct 366 TGTTGCCTTCACTTCAAATACTCCATCATCAATGGACAATAAAGATACATTAAACGTAGT 307 Query 518122 ACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--TGGT--TTTTATCAAGAC 518177 |||||||||||||||| | ||| | |||| || ||| || | |||| || | | Sbjct 306 TCCACCCATATCAAAAACCA--ACA--CGTTTCGTTCTCTATTGCTCTTTTTGTCCAATC 251 Query 518178 CATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAA 518237 | || || | || || || |||||||||||||| || | ||| || || | || ||| Sbjct 250 CGTATGCTATTGCTGCTGCTGTTGGTTCATTAATGATACGCAACACTTTTAATCCTACAA 191 Query 518238 TTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAA 518297 || ||||||||||||| || ||||||||||| ||| || || || || ||||| || | Sbjct 190 TTGTTCCTGCATCTTTTGTTGCTTGTCTTTGACCATCATTGAAGTACGCTGGAACTGTTA 131 Query 518298 TAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTA 518357 | || |||| | ||||| ||| | ||| | ||| ||| ||||| | | Sbjct 130 TGACTGCATTACTTACTGGGCAACCTAAATACGATTCTGCACTTTCTTTCAGGTGTAGCA 71 Query 518358 AAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTT 518417 | | ||||| |||||||| ||||| | || || | || | || || ||| |||||| Sbjct 70 ATACCATTGCTGAAATTTCTTCTGCGAAAAATCGTTTTGTCTCTCCTTTGTATAATACTT 11 Query 518418 C 518418 | Sbjct 10 C 10 >seq26427 Length=9375 Score = 132 bits (146), Expect = 4e-25 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 ||||||||||| || | || || ||||||| || | ||||| | |||||||||||| Sbjct 1525 CGTTTTGCATCGAAGACTGTGTTTTTTGGATTCATGGGCGCTTGGTTTTTGGCTGCATCG 1466 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 |||| || | | ||||| |||||||| | ||| |||||||| || | ||| | || | Sbjct 1465 CCAACCAAACGCTCTGTATCTGTAAAGGCAACGTATGATGGTGTAATTCGACTGCCCATA 1406 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 || || ||||||||||| ||||| || || || ||| || ||||| | | |||||| Sbjct 1405 TCGTTTGCAATAATTTCCACTTTGCCGTTAAGCATTACTCCGACACATGAATACGTTGTT 1346 Query 518693 CCTAAATCAATACCAA 518708 || |||||||| |||| Sbjct 1345 CCCAAATCAATCCCAA 1330 Score = 123 bits (136), Expect = 2e-22 Identities = 259/380 (68%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| | |||||| || || || | ||||||||||||||||||||||| || |||| Sbjct 3421 CACATTCAAAATACCGTTTGCGTCAATTTCAAATGTGACTTCAATTTGAGGAACTCCTCG 3362 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTAT-TATTATCTTTAGTGA 517382 ||| || ||||| || |||| ||| |||||| || || |||| ||| ||| | Sbjct 3361 AGGAGATGGAGGGATTCCAGTTAAATCGAATTTTCCCA-ATAATATATTGTCTGCAGTCA 3303 Query 517383 ATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTG 517442 | ||||| || | | | |||||| || ||| |||||| ||| ||| || Sbjct 3302 TTGCACGTTCTCCTTGATAGACTTGGATCAACACAGCAGGTTGATTGTCTTGATATGTGC 3243 Query 517443 TAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 517502 | |||||| |||||||| ||||| || |||| ||||||| | |||||||| | Sbjct 3242 TGAATACTTGTGATTTTTTTGTTGGAATGACTGAGTTTTTATCAATCAATTTGGTCATCA 3183 Query 517503 TACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATT-T 517561 ||| || | ||||| | ||| | || || || || ||||| | || | |||||| Sbjct 3182 CACCTCCGACAGTTTCAATACCCAATGACAGTGGTGTTACATCCAATA--ATAATATTCC 3125 Query 517562 TGAAGTTTTTCATC-AGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGC 517620 || |||| | | || | || | || || |||| | ||||| ||| |||| Sbjct 3124 TGTTGTTTCACCGCTTGTATCGCCGCTCAATATTGCACCTTGGACTGCAGCTCCAAATGC 3065 Query 517621 AACAGCTTCATCAGGATTAA 517640 ||| |||||||| || |||| Sbjct 3064 AACGGCTTCATCTGGGTTAA 3045 >seq9962 Length=3428 Score = 125 bits (138), Expect = 5e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 ||||| |||||||||| || || ||||||| |||| ||||| | |||||| ||| Sbjct 3415 CGTTTCACATCAAAAATTGTGTTTTTTGGATTGATTGTGGCTTGGTTTTTGGCCACATTG 3356 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || |||| | ||| | |||||||| | ||||||||| || ||| | || | || Sbjct 3355 CCGATCAAGCGCTCTTTTTCTGTAAAAGCAACATATGACGGTGTTTTTCGTTCGCCCATT 3296 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 || |||| ||||||||| ||||| ||||| || || |||||||| | | |||||| Sbjct 3295 TCGTTCGGAATAATTTCCACTTTGCCATTAAGCGTCACTCCTACACATGAATACGTTGTT 3236 Query 518693 CCTAAATCAATACCAAT 518709 || |||||||||||||| Sbjct 3235 CCCAAATCAATACCAAT 3219 >seq1205 Length=2342 Score = 125 bits (138), Expect = 5e-23 Identities = 311/462 (67%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 517279 ATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGAT 517338 ||||||||||||||| || ||||||||||| |||| || ||| | ||||||||| || Sbjct 1080 ATTGGCATCCAAATCGAAGGTGACTTCAATGCGAGGAACACCTTTTGGAGCAGGTGAAAT 1139 Query 517339 CCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTC 517398 | ||| ||| | ||| || ||| || || || |||| || | ||||| Sbjct 1140 TTCCGTCAATCCGAATTTGGCCAACAGATGATTGTCCTTGGTCAATTGTCTATTTCCCTC 1199 Query 517399 GAAAATTTGGATAGTAACTA--CAGTTTGATTATCTGAATAAGTTGTAAATAC-TCTGGA 517455 | | | ||| || |||| | ||| ||||||||| | |||||| || || | | || | Sbjct 1200 GTACACTTGAAT--TAACAAGCCAGATTGATTATCAGCATAAGTGGTGAACATATGTGTA 1257 Query 517456 TTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGT 517515 |||| ||||| || | | || | | || | || ||||| | |||||| || || Sbjct 1258 GTTTTG-CAAGGGATGGATTGATTGCGAGTGATCAATTTAGTCATCACACCACCCGCAGT 1316 Query 517516 TTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTTCA 517573 ||| | || | || | |||| ||||| | | || | || |||| || || Sbjct 1317 TTCAATTCCCAATGACAATGGAGCCACATCCAACAACACCACATCATTTGCCCCATT-CA 1375 Query 517574 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 517633 | ||| | ||| |||||| ||||||||||| |||||| ||||||| ||||||||| Sbjct 1376 TTTGTTCTCCATTCAA-AATAGCAGCTTGAATAGCGGCACCAAATGCAACGGCTTCATCA 1434 Query 517634 GGATTAACAGT--TTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTA 517691 |||| | ||| | || |||| ||| ||||| || | | || | |||||||| Sbjct 1435 GGATGGATAGTCGTGCA--AAGTTCTTTTCCATTAAAGTACTCCTTAATCAATTGTCTTA 1492 Query 517692 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 517733 | || ||||| |||| || || || || |||| || |||| Sbjct 1493 CTTTCGGAATTCGAGTGGACCCACCGACCAATATGATATCAT 1534 >seq2606 Length=6856 Score = 113 bits (124), Expect = 3e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 || |||||||||||||| || || ||||||| || | |||||||| |||||| || || Sbjct 2843 CGCTTTGCATCAAAAATTGTGTTTTTTGGATTCATGGGAGCTTGATTTTTGGCCGCGTCG 2902 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || | || | | ||||| |||||||| | ||| || || || ||| | || | || Sbjct 2903 CCGACCAAACGCTCTGTTTCTGTAAAGGCAACGTAAGAGGGTGTTATTCGGCTGCCCATG 2962 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 || || | ||| ||||| ||||| ||||| || ||| || ||||| | | || ||| Sbjct 2963 TCGTTTGGAATTATTTCCACTTTGCCATTGAGCATTACTCCGACACATGAATACGTCGTT 3022 Query 518693 CCTAAATCAATACCAATAGCAATTTTATCT 518722 || ||||| || |||| | |||||||| Sbjct 3023 CCCAAATCGATCCCAACCACGTTTTTATCT 3052 Score = 87.8 bits (96), Expect = 1e-11 Identities = 165/242 (68%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 |||| || | |||||||||||| |||||||| | || | || ||| ||| ||| Sbjct 2066 ACAAACCGTTCATCAAAATCTTCTCCTCCCAAATGCGTGTCACCACTCGTTGCTACGACT 2125 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | || | ||| || || | || ||| | | | || || ||| ||||| |||| ||| Sbjct 2126 TCAAACACTCCTTCATCCAAAGTCAACAAACTGACGTCGAAGGTGCCACCTCCCAAGTCA 2185 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || | || | ||| | ||||||| | |||||||| | || || |||| || ||| Sbjct 2186 AACACAATGATGTTCGTGTCTTTGTAT---TTTTTATCTAAGCCGTAAGCAAGTGCGGCA 2242 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || || ||||| || || | || || | || || || ||| ||||||| ||||| Sbjct 2243 GCCGTAGGCTCATTGATGATGCGCAGCACTGTTAGTCCGGCTATTGTTCCTGCGTCTTTC 2302 Query 518255 GT 518256 || Sbjct 2303 GT 2304 >seq23503 Length=11782 Score = 109 bits (120), Expect = 4e-18 Identities = 213/311 (68%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 |||||| ||||| |||||| | ||| ||||| |||||||||||||| | ||||||||| Sbjct 8566 TTTATCTTTGGCAGACACATTCAAAATGCCATTTGCATCCAAATCAAA-GAGACTTCAAT 8624 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAAT-TAAATGTTCCCAGATTAT 517367 ||| || |||| ||||||||||||| || |||||| ||||| |||| || | Sbjct 8625 TTGTGGACGTCCTCGAGGAGCAGGTGGGATTCCAACCAAATCGAAATG-GCCCAAATATT 8683 Query 517368 TATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT 517427 |||| || || | || |||||| || | ||| || || ||| || |||| Sbjct 8684 TATTGTCAGCAGCCATTTCTCGTTCTCCTTGATAAACTTTAATGCCCACTTGTGTCTGAT 8743 Query 517428 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAA 517487 |||| | ||| |||||||| ||||| || ||||| | || ||| | |||| Sbjct 8744 TATCAGCGGCAGTGCTAAATACTTCCGATTTCTTTGTCGGAATAGCAGTATTTTTCTCAA 8803 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | | || | | |||||| |||||| | ||| | || | ||||| ||||||| Sbjct 8804 TCAAACGTGTAAATACACCACCCATTGTTTCAATACCCAATGACAATGGAGTAACATCAA 8863 Query 517548 CTAGGACAATA 517558 | |||||| Sbjct 8864 TCAACACAATA 8874 >seq25151 Length=1420 Score = 105 bits (116), Expect = 5e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 ||||| |||||||||| || || |||||| || |||||||| ||||||| || Sbjct 1233 CGTTTCACATCAAAAATTGTGTTTTTTGGATCTATGATAGCTTGATTTTTGGCTAACTCG 1292 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || |||| | ||| | |||||||| | ||||||||| || ||| | || | || Sbjct 1293 CCGATCAAGAGCTCTTTTTCTGTAAAAGCAACATATGACGGCGTTTTTCGCTCGCCCATT 1352 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 || |||| |||||||| ||||||||||| || || |||||||| | | |||||| Sbjct 1353 TCGTTCGGAATAATTTTCACTTTACCATTAAGCGTCACTCCTACACATGAATACGTTGTT 1412 Query 518693 CCTAAATC 518700 || ||||| Sbjct 1413 CCCAAATC 1420 >seq18966 Length=8436 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 517591 AATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTT--CA 517648 ||| |||| ||||||||| ||||| ||| |||||||||||||||| ||| ||||| || Sbjct 7328 AATTGCTGATTGAATAGCTGCACCGTATACAACAGCTTCATCAGGGATAATAGTTTTGCA 7269 Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGAT 517708 | | |||| ||||| ||| | || || | |||| ||| | |||||||||| | Sbjct 7268 -AGACTCTTTT-CCATTAAAATATTTCTTAATTAATTGTTGTACTCTTGGAATACGAGTT 7211 Query 517709 GATCCTCCAACTAATACAA 517727 ||||| |||||| | |||| Sbjct 7210 GATCCACCAACTGACACAA 7192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778301090055154