Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7650 116 5e-21 seq1807 98.7 1e-15 >seq7650 Length=7814 Score = 116 bits (128), Expect = 5e-21 Identities = 329/496 (66%), Gaps = 12/496 (2%) Strand=Plus/Minus Query 112341 TGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACA 112400 || || | |||||| || |||||||||||||| || ||| || || | || || Sbjct 3020 TGCAATCGAAAGAGCAACCAAAAGAATTTGGGCACAATAAAGTCATCGAATTTGTGCACG 2961 Query 112401 GAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCT 112460 ||||| |||| | ||| || || ||| ||||| || | || || || || Sbjct 2960 GAAATTGTGGAGTACACATCTCCGGACGAAGTGGCAGTGTGCAATTTGGCGTCGATTGCA 2901 Query 112461 CTCCCCAAGTATGTGGATCCAGAGACAA-AGACATTTGATTATGAAAAACTCCACGAAGT 112519 | ||||||| |||||||||| |||| |||| ||||||| ||||||| |||| | Sbjct 2900 TTGCCCAAGTTTGTGGATCCAAAGACGCGAGAC-TTTGATTTGAAAAAACTTGTCGAAAT 2842 Query 112520 TACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGA 112579 | ||| ||| ||||| ||| | |||| ||| ||||| |||| |||||| || | Sbjct 2841 CGCCAAAGTTGTGACAAAGAACTTGAACAAAGTGATTGACGTGAATTATTACCCTGTCAA 2782 Query 112580 GACTGCTCGTAA-ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCG 112638 || || || ||| || ||| ||||||||||||||| | || || ||||| || | Sbjct 2781 AGAAGC-CGAAACATCGAACGTGAAACACCGTCCAATTGGCATTGGCGTGCAAGGACTGG 2723 Query 112639 CGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATG 112698 ||||| || ||||| ||| | ||||||| | | || || || | ||| Sbjct 2722 CGGATACGTTTATTCTCATGCGCTATCCATTTGACAGCAAAGAGGCACTCCAACTGAAT- 2664 Query 112699 CGCG-TATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCG---GAGTTGGCA 112754 || | ||||||||| | || || | ||| | | || |||| || ||||| Sbjct 2663 CGAGATATATTTGAAGCCATTTACTTTGGCGC---AGTGTCGGCTTCGTGCGAATTGGCT 2607 Query 112755 GAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAA 112814 || ||| || || || |||||| || ||||| || || |||||| || ||| Sbjct 2606 GAAAAGTGTGGGCCCTACAAATCCTTTGCTGGGTCTCCTGCCTCCAAAGGGGAACTCCAA 2547 Query 112815 TTTGATATGTGGGAAG 112830 ||||| ||||||| || Sbjct 2546 TTTGACATGTGGGGAG 2531 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 112887 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTG 112946 || || || || ||| | || |||| |||||||||||||| || ||| ||||| ||| Sbjct 2393 GGACTACGAAATAGTTTATTAGTGGCGCCAATGCCAACAGCGTCGACCAGTCAAATATTG 2334 Query 112947 GGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCG 113006 || ||||| || ||||||||||| ||||||| || | || || | | || | || Sbjct 2333 GGAAATAACGAGTGCTTTGAACCATACACGAGCAATGTATACGTGCGTCGCACTTTGGCA 2274 Query 113007 GGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCT 113047 || ||||||||| ||||| | ||| | ||| ||| || Sbjct 2273 GGCGAGTTTGTGTGCATCAACGAACATTTGGTGCGTGATCT 2233 >seq1807 Length=15346 Score = 98.7 bits (108), Expect = 1e-15 Identities = 207/304 (68%), Gaps = 5/304 (2%) Strand=Plus/Plus Query 112350 AAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTG 112409 || || |||||| |||||||||| || || ||| || | || |||||||| || Sbjct 8268 AAAAGCAATCAACAGAATTTGGGAACAATTAAATCTTCAAATTTATGCACAGAAATTGTG 8327 Query 112410 GAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAG 112469 || | ||| |||||| | ||||| ||||| | || || ||| | | ||||| Sbjct 8328 GAGTACACATCTCCAGATGAAATTGCTGTATGTAATTTGGCCTCTATCTCGTTGCCCAAA 8387 Query 112470 TATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACT 112529 | ||| || | |||| |||||||||| ||||||| | ||||||||||||| Sbjct 8388 TTTGTCAATGTTGCGACACGAACATTTGATT-TGAAAAATTAGTAGAAGTTACGAAAATA 8446 Query 112530 GTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGT 112589 || || ||| | |||| | ||||||| | |||| ||| || | || | | | Sbjct 8447 GTAACCCGAAATTTGAACAAAATTATTGACATTAATTATTATCCAAT-GAAAGAGG-CAA 8504 Query 112590 AAA--TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTAT 112647 ||| || ||| ||| || || || ||||| | ||||| |||||||| || ||||||| Sbjct 8505 AAACTTCGAATTTGAAGCATCGCCCTATTGGCATTGGTGTTCAAGGTCTGGCAGATGTAT 8564 Query 112648 TCAT 112651 |||| Sbjct 8565 TCAT 8568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620348158742480