Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq18675 107 2e-18 >seq18675 Length=10899 Score = 107 bits (118), Expect = 2e-18 Identities = 279/418 (67%), Gaps = 7/418 (2%) Strand=Plus/Plus Query 11494 TGAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGG 11553 ||||| | |||||||| | || || || | ||||||| || | |||||| |||| Sbjct 2743 TGAATTTGGCGATCGAACCTGCCGGGACGAATTAGAGCACTGTCCAAGATATCGGCACGA 2802 Query 11554 TTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGA 11613 || || | |||| || ||||||||||| ||| | | ||| || |||||||| ||| Sbjct 2803 TTGGTGCCAGCAAGCACGACAATGCCAGTGTCACTTTTGAATCCATCCATTTCCACGAGC 2862 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG--GAGGGCATA-CCACCTGCCGAACGC 11670 | || |||| ||| | ||| || || |||||| ||| | || ||| | ||| Sbjct 2863 AATTGATTGAGCGTGTTTTCCCGTTCGTCGTTGCCCCCAGCAAAGCCGCCTTTTGCACGT 2922 Query 11671 TTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCC 11730 || || || || || || || |||||||| | ||| || ||| || ||||| Sbjct 2923 TTGCGTCCAACGGCATCGATTTCGTCGATGAAGATGATGCAAGGTGCATTTTGGCGTGCT 2982 Query 11731 TGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTT 11790 | |||||| || | || || || | || || || || ||||| || || |||| Sbjct 2983 TCTTCGAACAGATTGCGAACGCGAGAAGGGCCGACGCCGACAAACATTTCGACAAAGTCA 3042 Query 11791 GCGGCA-GAACACTGAATGAAGGGAACATT-AGACTCACCAGCGATGGCTCGAGCGAGGA 11848 | || || |||||| ||| ||||| | ||| ||||||| || || ||||| | Sbjct 3043 CTGCCACTAATACTGAA-GAA-CACACATTCGGCCTCGCCAGCGACAGCACGTGCGAGCA 3100 Query 11849 GAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 |||| || || || ||||| | || |||| || || || ||| ||| ||||||| Sbjct 3101 GAGTTTTGCCAGTGCCAGGGGGTCCTACGAGCAGAGCCCCTTTGGGAATCCTGGCACC 3158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588601933980200