Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1807 145 9e-30 seq7650 134 2e-26 seq146 122 1e-22 >seq1807 Length=15346 Score = 145 bits (160), Expect = 9e-30 Identities = 230/325 (71%), Gaps = 5/325 (2%) Strand=Plus/Minus Query 106250 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 106309 ||||||| |||| ||| || |||||||| || |||||||||||||| | |||||| Sbjct 8589 TCAAATGGAAAGCGCAGCAATATGAATACATCTGCCAGACCTTGAACACCAATGCCAATA 8530 Query 106310 GGTCTGTGTCGCATATTAGA--CTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 106367 || | || || ||| || ||| || | | || | |||||| |||| |||||| Sbjct 8529 GGGCGATGCTTCAAATTCGAAGTTTTTGC-CTCTTTC-ATTGGATAATAATTAATGTCAA 8472 Query 106368 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAA 106427 | | | ||| | |||| ||| || || || || | ||| | ||||||| |||||| Sbjct 8471 TAATTTTGTTCAAATTTCGGGTTACTATTTTCGTAACTTCTACTAATTTTTCA-AATCAA 8413 Query 106428 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 106487 | || || ||| | |||||||| | || || | | ||| || |||||||| || |||| Sbjct 8412 ATGTTCGTGTCGCAACATTGACAAATTTGGGCAACGAGATAGAGGCCAAATTACATACAG 8353 Query 106488 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCG 106547 | | ||||| | ||||||||| | ||||||||| || || || ||| ||||| | Sbjct 8352 CAATTTCATCTGGAGATGTGTACTCCACAATTTCTGTGCATAAATTTGAAGATTTAATTG 8293 Query 106548 TCCCCAAATTCTTTTGGTTACTCTT 106572 | |||||||||| ||| || || || Sbjct 8292 TTCCCAAATTCTGTTGATTGCTTTT 8268 >seq7650 Length=7814 Score = 134 bits (148), Expect = 2e-26 Identities = 331/496 (67%), Gaps = 12/496 (2%) Strand=Plus/Plus Query 106092 CTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCAT 106151 || ||||||| |||||||| || |||||| ||| | ||||| || |||| | | | Sbjct 2531 CTCCCCACATGTCAAATTGGAGTTCCCCTTTGGAGGCAGGAGACCCAGCAAAGGATTTGT 2590 Query 106152 AGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGA---TACATGG 106208 ||| || |||||||||||| || ||| || |||| | || |||| Sbjct 2591 AGGGCCCACACTTTTCAGCCAATTCGCACGAAGCCGACAC---TGCGCCAAAGTAAATGG 2647 Query 106209 TTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT--CTGAATCAAATGCGTAGCGGCA 106266 |||||| ||| ||||| | || || | ||| ||||||| ||||| Sbjct 2648 CTTCAAATATATCTCGATTCAGTTGGAGTGCCTCTTTGCTG--TCAAATGGATAGCGCAT 2705 Query 106267 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 106326 | |||||| |||||| || ||||| || || | ||||| || | |||| || || Sbjct 2706 GAGAATAAACGTATCCGCCAGTCCTTGCACGCCAATGCCAATTGGACGGTGTTTCACGTT 2765 Query 106327 AGAC-TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTT 106385 || ||||| || | || || ||| |||| |||||| ||| ||| | || | Sbjct 2766 CGATGTTTCG-GCTTCTTTGACAGGGTAATAATTCACGTCAATCACTTTGTTCAAGTTCT 2824 Query 106386 TGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT 106445 | || |||| || | |||||| |||||||| ||||||| || |||| | || Sbjct 2825 TTGTCACAACTTTGGCGATTTCGACAAGTTTTTTCAAATCAAAGTCTCGCGTCTTTGGAT 2884 Query 106446 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 106505 ||| |||| || | || || || ||||||||||| || ||| || ||| | || Sbjct 2885 CCACAAACTTGGGCAATGCAATCGACGCCAAATTGCACACTGCCACTTCGTCCGGAGATG 2944 Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 ||||||| | |||||| || ||||| || || ||| || || |||||||||||||||| Sbjct 2945 TGTACTCCACAATTTCCGTGCACAAATTCGATGACTTTATTGTGCCCAAATTCTTTTGGT 3004 Query 106566 TACTCTTTTTGTTGCA 106581 | |||||| ||||| Sbjct 3005 TGCTCTTTCGATTGCA 3020 Score = 86.0 bits (94), Expect = 7e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 105856 CCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCC 105915 ||||| || | ||| | |||||| || | ||| | ||||| ||||||||| || Sbjct 2214 CCAAATGCCCAAGTTCATTAGATCACGCACCAAATGTTCGTTGATGCACACAAACTCGCC 2273 Query 105916 CGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACC 105975 || | || | | || || | || ||||||| ||||||||||| || ||||| || Sbjct 2274 TGCCAAAGTGCGACGCACGTATACATTGCTCGTGTATGGTTCAAAGCACTCGTTATTTCC 2333 Query 105976 CAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC 106035 ||| ||||| ||| || |||||||||||||| |||| || | ||| || || || || Sbjct 2334 CAATATTTGACTGGTCGACGCTGTTGGCATTGGCGCCACTAATAAACTATTTCGTAGTCC 2393 >seq146 Length=10098 Score = 122 bits (134), Expect = 1e-22 Identities = 328/496 (66%), Gaps = 12/496 (2%) Strand=Plus/Plus Query 106092 CTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCAT 106151 || |||||||||||||||| ||| | |||| ||| | || || |||| | | ||||| Sbjct 8815 CTCCCCACATATCAAATTGCAGCTCTCCTTTGGAAGCTGGTGATCCCTTGTACGACTCAT 8874 Query 106152 AGG----AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATG 106207 ||| || ||| ||| ||||||||||| ||| || | | | || ||| Sbjct 8875 AGGGCCCAAACTT----TTCCGCCAATTCACAAGAAGCCGACACTGCTCCAAAGTAAATG 8930 Query 106208 GTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA- 106266 | |||||||| | |||| | ||| || | ||||| | | | ||| Sbjct 8931 GCCTCAAAGATTTCACGGTTCAATTGAAGGGCATCTTTGCTTTCAAAGG-GCAATTGCAT 8989 Query 106267 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 106326 || ||| || ||||| || | || || ||||| | ||||| |||| |||| || ||| Sbjct 8990 CAGAATGAACACATCGGCCAAGCCCTGCACACCAATGCCAATTGGTCGGTGTTTCAAATT 9049 Query 106327 AGACTT-TCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTT 106385 ||| ||| | | ||| |||||||||| || |||||| ||| ||| | || | Sbjct 9050 GGACACCTCGGCCTCTTTCA-CGGGATAAAAGTTCACGTCAATCACTTTGTTCAAGTTCT 9108 Query 106386 TGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT 106445 | || || | || || | ||| ||||| || | || || ||||| ||| | ||| Sbjct 9109 TTGTCACTACTTTGGTCACTTCGACCAGTTTCTCCAAGTCGAACTTGCGACTCTTTGCAT 9168 Query 106446 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 106505 ||| | || || || || || || ||||| ||||| || || || || | || Sbjct 9169 CCACAAATTTAGGCAGAGCAATCGACGCCAAGTTGCACACCGCGACTTCGTCTGGAGATG 9228 Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 ||||||| | || || || |||||||| || ||| ||||| ||||| || ||||||| Sbjct 9229 TGTACTCCACTATCTCGGTGCACAAGTTCGATGACTTTATCGTACCCAAGTTTTTTTGGT 9288 Query 106566 TACTCTTTTTGTTGCA 106581 | |||||| | ||||| Sbjct 9289 TGCTCTTTCTATTGCA 9304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589606095819160