Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq42319 84.2 3e-11 >seq42319 Length=3671 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/117 (77%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 113784 GTCTGGGGTTCAAGTCCTCATGGGCCTGCCAAG---TTTGGGGGATTAGCTCAGTTGGAA 113840 ||| | ||||||||||||| | | || ||| | ||||||| ||||||||| ||| | Sbjct 1623 GTCGGAGGTTCAAGTCCTCCTCGACCCACCATGACTTTTGGGGCGTTAGCTCAGCTGGGA 1682 Query 113841 TGAGCGACTGGTTTGCAACCAGTAGGTCATCGGTTCGACCCCGATATCCTCCACCAA 113897 |||| ||| ||||||| ||| |||| ||||||||| ||||| | ||||||||| Sbjct 1683 -GAGCACCTGCTTTGCAAGCAGGGGGTCGTCGGTTCGATCCCGACACGCTCCACCAA 1738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752126811283960