Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq18560 132 1e-26 >seq18560 Length=3023 Score = 132 bits (146), Expect = 1e-26 Identities = 284/419 (68%), Gaps = 8/419 (2%) Strand=Plus/Plus Query 5020 CGGCCGCCGTTGCGACCGCGTGCGCGAGCCGCTTTCAGGCCGGCGAGGGTGTTTTCGCTT 5079 ||||| ||| || || || ||||| ||||||| || ||| || |||| ||||| Sbjct 851 CGGCCACCGGATCGGCCACGGGCGCGGGCCGCTTCCAAGCCCGCCCGGGTTCGTTCGCGG 910 Query 5080 ATCACGTCGCGTTGATACTGAGCCATCGCCGCGATGAAACCGAAAAACATGCGGCCTTGC 5139 |||| | |||| | | ||| |||| |||||||| | | ||| || ||| | Sbjct 911 ATCAAGCCGCGCTCAAACTCGGCCAGCGCCGCGAAAACATGGAATTGCAGCTTGCCCGCC 970 Query 5140 GCGGTGCTCGTGT-CGATCTTTTCCGACAGGCTTTCGAACGCGACGCCACGGCCGGCCAG 5198 ||| | | || | |||||||||| | |||||| |||||| ||||| || | || Sbjct 971 GCGCTCCCTGTCTTCGATCTTTTCGGTCAGGCTCTCGAACTGCACGCCGCGCTGCTCAAG 1030 Query 5199 CTCGTCGACGAGCTGCACGAGGTCGACGAGCGAGCGGCCGAGGCGATCGAGCCGCCAAAC 5258 ||| | |||| |||||| || ||| || ||| ||||| ||||| |||||||| || Sbjct 1031 GTCGGCCACGATCTGCACCAGATCGGGCAGGCTGCGTCCGAGTCGATCCAGCCGCCACAC 1090 Query 5259 GATCAGCGTGTCGCCCTTGCGTAACGC-TCGCATCATGTTCGCCAGCTCGGGCCGT-CCG 5316 || || || || || || | ||| | | || | | | ||||| || ||| ||| Sbjct 1091 GACGAGGGTATCCCCGGCCCGGAGCGCCTTCCGGCAC-TGCTCAAGCTCCGGGCGTGCCG 1149 Query 5317 TCCTTCGACTTTCCGCTCGCCTTTTCTTCGTACACCTGCACGCAACCAGCTCGCGCGAGC 5376 || ||| ||||| ||| ||| ||||| | | ||| || || || ||| Sbjct 1150 CGCT----CTTGCCGCTGGCCGCTTCCTCGTAGATGGTCGAGCACCCGGCCTGCCGGAGT 1205 Query 5377 GCGTCGTGTTGCAGCTCTAGGTTTTGATCGACCGTCGACACGCGCGCATAGCCGATGCG 5435 ||||| ||||||| || || || |||||| | ||||| ||||| |||||||||||||| Sbjct 1206 GCGTCCCGTTGCAGGTCAAGATTCTGATCGTCGGTCGAAACGCGGGCATAGCCGATGCG 1264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103230477578982