Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq45910 113 3e-20 seq49792 104 2e-17 seq35091 104 2e-17 seq19166 100 2e-16 seq28421 98.7 6e-16 seq27925 87.8 1e-12 seq19397 87.8 1e-12 seq19824 84.2 1e-11 >seq45910 Length=1805 Score = 113 bits (124), Expect = 3e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| |||||||| | ||||||||||| ||||||||||| || | |||| | | | ||| Sbjct 332 CAACACCAAGTGTAGCGTGCTTTCTTTTTGAATGTTATAATCACTCAAGG-TCCTTCCAT 274 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | || | |||||||| ||||| |||||||||||||| ||| | || | || ||||||| Sbjct 273 CTTCTAATTGTTTTCCAGCAAAGATTAGTCGTTGCTGTTCTGGAGGAATGCCTTCCTTGT 214 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | ||||| ||| || | |||| ||| || |||||||| | || || | Sbjct 213 CTTGGATCTTGGCTTTCACATTTTGGATCGTGTCATTGGGTTCAACATCCAATGTGATTG 154 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAG 34973 |||| || || || || ||||||||| Sbjct 153 TTTTCCCAGTTAGGGTTTTCACAAAG 128 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATC 34828 || |||||||| | ||||||||||| ||||| || ||||| | || | ||| | |||| Sbjct 653 AACACCAAGTGCAACGTGCTTTCTTTTTGAATATTGTAGTCGCTTAAAG-TTCTTCCATC 595 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| |||||||| ||||| || | || || || || | || | || ||||| || Sbjct 594 TTCCAATTGTTTTCCCGCAAAAATCAAGCGCTGTTGTTCAGGGGGTATTCCTTCCTTATC 535 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| ||| ||||| | |||| ||| || ||| ||||| | ||| ||||| Sbjct 534 TTGAATTTTCGCCTTGACATTTTGGATCGTGTCATTGGGCTCGACATCTAAGGTAATGGT 475 Query 34949 TTTTCCCGTGAGAGTCTTCACAAA 34972 ||| || || | ||||||||| || Sbjct 474 TTTACCAGTTAAAGTCTTCACGAA 451 >seq49792 Length=5355 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| || || || | |||||||| || || ||||| || || | || | ||| | ||| Sbjct 436 CAATACTAAATGCAACGTGCTTTCCTTTTGGATGTTGTAATCGCTCAAAG-TTCTTCCAT 378 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | |||| ||||||||| ||||| |||| |||||| || ||| | || | || ||||||| Sbjct 377 CTTCCAACTGTTTTCCAGCAAAGATTAATCGTTGTTGCTCTGGTGGAATGCCTTCCTTGT 318 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | ||||| || ||| | || | ||| || |||||| || | |||||||| Sbjct 317 CTTGGATCTTTGCCTTAACGTTTTGGATTGTATCATTGGGCTCAACGTCTAAGGTTATGG 258 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAG 34973 |||| ||||| | |||||||||||| Sbjct 257 TTTTGCCCGTCAATGTCTTCACAAAG 232 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| ||||| || | |||||||||||| || |||||||| || | |||| | | | ||| Sbjct 754 CAATACCAAATGCAATGTGCTTTCTTTTTGGATGTTATAATCGCTCAAGG-TCCTTCCAT 696 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | |||| || ||||||||||| || |||||||| || ||| | || | || ||||||| Sbjct 695 CTTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGTTGCTCTGGAGGAATGCCTTCCTTGT 636 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | || || ||| ||| | |||| || || |||||||| | || || | Sbjct 635 CCTGGATTTTGGCTTTCACGTTTTGGATCGTGTCGTTGGGTTCAACATCCAACGTGATTG 576 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAG 34989 |||| || || | ||| ||||| | ||||| ||| ||||| Sbjct 575 TTTTCCCAGTTAAAGTTTTCACGA--ATCTG--TATACGTAG 538 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATC 34828 || ||||| || | ||||||||||| |||||||| ||||| | || | | || |||| Sbjct 1047 AACACCAAATGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCTTAAAG-TGCGGCCATC 989 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || | |||||||| ||||| || | ||||| || || | || | || |||||||| Sbjct 988 TTCTAATTGTTTTCCTGCAAAAATCAAGCGTTGTTGTTCAGGAGGGATTCCTTCCTTGTC 929 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| ||| || ||| | |||| || || ||| ||||| | ||| || || Sbjct 928 TTGAATTTTCGCCTTTACGTTTTGGATCGTGTCGTTGGGCTCGACATCTAAGGTAATAGT 869 Query 34949 TTTTCCCGTGAGAGTCTTCACAAA 34972 ||| || || | ||||||||| || Sbjct 868 TTTGCCGGTCAAAGTCTTCACGAA 845 >seq35091 Length=3122 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| || || || | ||||||||||| || ||||||||||| | |||| | | | ||| Sbjct 959 CAACACTAAATGCAGCGTGCTTTCTTTTTGGATGTTATAGTCACTCAAGG-TCCTTCCAT 901 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | || | |||||||||||||| |||| ||||||||| ||| | || | || ||||||| Sbjct 900 CTTCTAATTGTTTTCCGGCAAAGATTAATCGTTGCTGTTCTGGAGGAATGCCTTCCTTGT 841 Query 34888 CGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 | || || ||| || | |||| ||| || |||||| || | || || | Sbjct 840 CTTGGATTTTGGCTTTCACATTTTGGATCGTGTCATTGGGCTCAACGTCCAATGTGATTG 781 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAG 34973 |||| || || ||||| ||||||||| Sbjct 780 TTTTCCCAGTTAGAGTTTTCACAAAG 755 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATC 34828 || |||||||| | ||||||||||| |||||||| ||||| | || | ||| | | || Sbjct 1274 AACACCAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCTTAAAG-TTCTTCCGTC 1216 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| |||||||| ||||| || | ||||| || || | || | || ||||| || Sbjct 1215 TTCCAATTGTTTTCCTGCAAAAATCAAGCGTTGTTGTTCAGGGGGGATTCCTTCCTTATC 1156 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| || |||||| | |||| || ||| |||||||| | ||| ||||| Sbjct 1155 TTGAATTTTTGCTTTGACATTTTGGATCGTGTCGTTGGCTTCAACATCTAAGGTAATGGT 1096 Query 34949 TTTTCCCGTGAGAGTCTTCACAAA 34972 ||| || || | ||||||||| || Sbjct 1095 TTTGCCGGTCAAAGTCTTCACGAA 1072 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/208 (70%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| ||||| || | ||| ||||| || || ||||||||||| | |||| |||| | | Sbjct 293 CAATACCAAATGCAATGTACTTTCCTTTTGGATGTTATAGTCACTTAAGG-TTCGGCCGT 235 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | || | |||||||||||||| || | ||||||||| ||| | || | || ||||||| Sbjct 234 CCTCTAATTGTTTTCCGGCAAAGATCAATCGTTGCTGCTCTGGTGGGATGCCTTCCTTGT 175 Query 34888 CGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 | ||| || ||| ||| | || |||| || | ||| || || | ||||| Sbjct 174 CTTGAATTTTGGCTTTCACG--TTCTGGATCGTGTCGTTAGGCTCGACGTCCAACGTTAT 117 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 |||||||| || | || || || ||| Sbjct 116 TGTTTTTCCGGTCAAGGTTTTTACGAAG 89 >seq19166 Length=5045 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATC 34828 || |||||||| | ||||||||||| |||||||| ||||| | || | ||| | |||| Sbjct 4766 AACACCAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCTTAAAG-TTCTTCCATC 4824 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| |||||||| ||||| || || ||||| || || | || | || |||||||| Sbjct 4825 TTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGTTGTTCAGGGGGGATTCCTTCCTTGTC 4884 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || ||| ||||| | |||| ||| | ||| ||||| | ||| ||||| Sbjct 4885 TTGGATTTTCGCCTTGACATTTTGGATCGTGTCATTCGGCTCGACATCCAAGGTAATGGT 4944 Query 34949 TTTTCCCGTGAGAGTCTTCACAAA 34972 ||| || || | ||||||||| || Sbjct 4945 TTTGCCTGTCAAAGTCTTCACGAA 4968 >seq28421 Length=944 Score = 98.7 bits (108), Expect = 6e-16 Identities = 143/202 (71%), Gaps = 10/202 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCATCATC 34831 |||||||| | ||||||||||| ||||||||||| || | |||| || || Sbjct 307 ACCAAGTGTAGCGTGCTTTCTTTTTGAATGTTATAATCACTCAAGG---------TCTTC 357 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||||||||||||||||| |||||| || ||| | || | || |||||||| Sbjct 358 CAATTGTTTTCCGGCAAATATTAATCGTTGTTGCTCTGGAGGAATGCCTTCCTTGTCTTG 417 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || ||| | | | |||| ||| || ||||||||| | || || ||||| Sbjct 418 GATTTTGGCTTTCAAGTTTTGAATCGTATCATTGGGCTCAACATCCAACGTAATTGTTTT 477 Query 34952 TCCCGTGAGAGTCTTCACAAAG 34973 ||| || | ||| ||||| ||| Sbjct 478 TCCGGTTAAAGTTTTCACGAAG 499 >seq27925 Length=8008 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGAAAGGCTTCGTTCAT 34827 ||| |||||||| | ||||||||| || || ||||| || || | |||| |||| ||| Sbjct 7913 CAATACCAAGTGCAATGTGCTTTCCTTTTGGATGTTGTAATCACTCAAGG-TTCGACCAT 7855 Query 34828 CATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34887 | |||| || ||||||||||| || | ||||||||| ||| | || | || ||||||| Sbjct 7854 CCTCCAATTGCTTTCCGGCAAAGATCAATCGTTGCTGCTCTGGTGGAATGCCTTCCTTGT 7795 Query 34888 CGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 | || || || ||| | || |||| || |||||| || || | || || Sbjct 7794 CTTGGATTTTGGCCTTCACG--TTCTGGATCGTGTCGTTGGCCTCGACGTCCAACGTGAT 7737 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 |||||||| || | || ||||| ||| Sbjct 7736 TGTTTTTCCAGTTAAGGTTTTCACGAAG 7709 >seq19397 Length=4183 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGA 34813 || || | ||| | ||| ||||| || | ||||||||||| || ||||| || || | Sbjct 4117 CCACCTCGCAAACGCAACACCAAATGCAAGGTGCTTTCTTTTTGGATGTTGTAATCGCTC 4058 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | |||| | || |||| || || |||||||| || | ||||| || || | || Sbjct 4057 AAAG-TTCGGCCGTCCTCCAATTGCTTGCCGGCAAAGATCAAACGTTGTTGCTCAGGGGG 3999 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || |||||||| ||| ||| ||||||| | || | || || |||||| Sbjct 3998 AATTCCTTCCTTGTCCTGAATTTTCGCTTTGACGTTTTGGATGGTGTCGTTGGGCTCAAC 3939 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 ||| | || || |||||||| || | ||||||||| ||| Sbjct 3938 ATCCAACGTAATTGTTTTTCCAGTCAAAGTCTTCACGAAG 3899 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | ||||||||||| || ||||||||||| ||| | || |||| Sbjct 3811 CAACACCAAGTGTAAGGTGCTTTCTTTTTGGATGTTATAGTCGCTCAGGGTGCGGCCATC 3752 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || | || ||||| ||||| || | |||||| || || | || | || ||||| || Sbjct 3751 TTCTAATTGCTTTCCTGCAAAGATCAATCGTTGTTGCTCAGGGGGGATACCTTCCTTATC 3692 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || || ||| ||| | || | ||| || ||| ||||| | || || || Sbjct 3691 CTGGATTTTGGCTTTCACGTTTTGGATGGTGTCATTGGGCTCCACATCCAACGTGATTGT 3632 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAG 34973 |||||| || | ||| || |||||| Sbjct 3631 TTTTCCAGTCAAAGTTTTGACAAAG 3607 >seq19824 Length=8713 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGA 34813 || || | ||| | ||| ||||| || | || |||||||| || ||||| ||||| | Sbjct 6333 CCACCACGCAAACGCAATACCAAATGCAAGGTACTTTCTTTTTGGATGTTGTAGTCGCTC 6392 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | ||| | |||| || | ||||| |||||||| || || ||||| || || |||| Sbjct 6393 AAAG-TTCTTCCATCCTCTAATTGTTTGCCGGCAAAGATGAGACGTTGTTGCTCAGGCGG 6451 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC-----GGATGCTATCGATTCACCGGCC 34928 | || |||||||| || ||| ||||| ||||| | ||| | || Sbjct 6452 AATACCTTCCTTGTCCTGGATTTTCGCCTTGACATTTTGGATGGTGTCGTT-----GGGT 6506 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || | || ||||||||||| || | || || |||||||| ||||| Sbjct 6507 TCCACGTCCAACGTAATGGTTTTTCCGGTCAAGGTTTTAACAAAGATTTGCAT 6559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324432575614152