Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7650 149 7e-31 seq1807 104 3e-17 seq10537 86.0 7e-12 >seq7650 Length=7814 Score = 149 bits (164), Expect = 7e-31 Identities = 206/284 (73%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || || ||||||||||||||||| || ||||||| |||| | | || |||||| Sbjct 3821 TTCAGCGTATCATAAATTCCTTCAATGGAATCATCTTTCATGGTGATAAGGAAACAAGAG 3880 Query 48582 GACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCAT 48641 || | ||||||| || || || ||| |||| ||| || ||||| |||||||||||| Sbjct 3881 GATAGTTGCGGACGAGGCGTGCCACTATTGAATAGTGTGGGTGATGCGTGAATAAACCAT 3940 Query 48642 TTCT--CTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATA 48698 || | || || ||| || || ||||||||| | | ||| | ||| | || |||||| Sbjct 3941 TTTTGACTCAT--CAAATTGTACGTTTCAATAGCGGCATCCACGTCCTCCATG-TGTATA 3997 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 || | || |||||||||||||| | || ||||| || | ||||| ||| | |||| Sbjct 3998 CCCAGCGACACACGCATTAACATGTGCTGCGGTCTCTCTGCTATTTTACCATTGACTTTC 4057 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || | ||| ||| | |||| ||| || | ||||||||| | ||| Sbjct 4058 AACAAATACGATCTCTCCAGTGTCTTTACACCAAAATAATCGTA 4101 >seq1807 Length=15346 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 ||| ||||| ||||| || || || | |||| | || || || || || ||||| Sbjct 8009 ATACAACTTTTCAAACTCTTCGCCCCAGACATCAAACAATCCTTTGCACTCGTTCGGACA 7950 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 ||||| |||| ||||||||||| || | | |||| || | |||||| | ||| || Sbjct 7949 CATCAGACTCCAAATTTCATCATTTTTCACCCGATTCATGAAAAGATCTGGGACCCACAG 7890 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 |||| ||| ||||| | |||| | ||||||| | ||| ||||| || || | Sbjct 7889 CGCTAAAAACAAATCGCGTGTTCGTTCTTCTTCACTTCCATGGTTCCTGCGCAGATCCAA 7830 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGC 48337 ||| || | ||||||||| ||||| || || | ||||||||| Sbjct 7829 AAATTCAAATATATCAGCGTGCCAAGGCTCGAGATATATTGC 7788 >seq10537 Length=5798 Score = 86.0 bits (94), Expect = 7e-12 Identities = 194/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 48528 GTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATT 48587 |||||||||||||| || || ||||||| |||| | || |||||||| |||| Sbjct 5376 GTATCATAAATTCCCTCAATGGAATCATCTTTCATGGTCAACAGAAAACACGACGACAGC 5317 Query 48588 TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT-- 48645 || ||| || |||||| || || || || || || |||||| |||||||||| | Sbjct 5316 TGGGGACGAGGTGTTCCTCCGTTGAACAACGTGGGCGAAGCATGAGTAAACCATTTTTGA 5257 Query 48646 CTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATA 48704 || || || || || ||||| || ||| || | ||| | || || ||||| | Sbjct 5256 CTCAT--CAGATTGTACGTTTCTATGGCAGCGTCCAAGTCCTCCATG-TGAATACCGAGG 5200 Query 48705 GATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGA 48764 || || ||||| | ||| | || ||||| || |||||| ||||| ||| | | Sbjct 5199 GACACTCGCATGAGCATGTGCTGTGGTCTCTCGGCAATTTCTCCATTTAATTTGAGCAAG 5140 Query 48765 TATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 || ||| || | ||||||| ||| || |||| || |||||| Sbjct 5139 TAGGATCGCTCAAGCGTTTTAATACCGAAGTAGTCATAATCAAAGTC 5093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561751797674760