Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq26427 141 7e-28 seq2606 125 6e-23 seq23503 104 2e-16 seq10766 102 7e-16 seq19824 98.7 8e-15 seq45910 96.9 3e-14 seq35091 95.1 1e-13 seq35349 91.5 1e-12 seq21249 91.5 1e-12 seq45884 86.0 5e-11 >seq26427 Length=9375 Score = 141 bits (156), Expect = 7e-28 Identities = 321/478 (67%), Gaps = 10/478 (2%) Strand=Plus/Plus Query 552126 CTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAAT 552185 || || ||||| || ||| | ||||| ||||| | ||||| ||| ||| ||||| Sbjct 2963 CTCGTGGGTGGCTCAACACGTATTCCCAAAATCCAACAAATGGTAAAAGATTACTTCAAC 3022 Query 552186 GGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATT 552245 || ||| || ||| | |||| |||||||| || ||||| | ||| || ||| | Sbjct 3023 GGAAAAGAACCAAACCGTGGCATTAACCCAGATGAAGCCGTTGCATTTGGAGCTGCAGTC 3082 Query 552246 CAAGCAGCTATTCTTTCTGG----ACAAACTGATGAAAAACTACAA-AATATTGTACTTG 552300 |||| || || | || |||| | | ||||| | ||| |||||| | ||| Sbjct 3083 CAAGGTGCAATATTGAGCGGCGATACAAGCGG-TGAAACA--ACAGGAATATTATTATTG 3139 Query 552301 TAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTA 552360 ||||| || || || || | ||| | ||||| || |||||| | ||||| || | | Sbjct 3140 --GATGTAACACCACTGTCATTGGGTATTGAAACTGTCGGAGGTGTGATGACCAAATTGA 3197 Query 552361 TCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATA 552420 | |||| ||| | ||||| |||||||| | ||||| || ||| ||| | Sbjct 3198 TTGATAAAAACTCAGTCATTCCAACAAAAAAATCACAAGTATTCAGCACATATCAAGACA 3257 Query 552421 ATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATA 552480 ||||| ||||||| || ||| | | | |||||||| | | | ||| ||| |||| Sbjct 3258 ATCAACCTGCTGTGTTGATCCAAGTCTATCAAGGAGAACGTGCAATGACTGCAGACAATA 3317 Query 552481 ATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAA 552540 | | || | || ||||| || || ||||| ||||||| ||||| || |||| Sbjct 3318 TATTATTGGGAAAATTCGATTTAACTGGAATCCCTCCATCTCCTCGAGGAGTTCCTCAAA 3377 Query 552541 TTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||||| || || || || || || || || |||||||||||| |||| |||||| Sbjct 3378 TTGAAGTCACATTTGAAATTGACGCAAACGGTATTTTGAATGTGGAAGCTTATGATAA 3435 >seq2606 Length=6856 Score = 125 bits (138), Expect = 6e-23 Identities = 313/476 (66%), Gaps = 6/476 (1%) Strand=Plus/Minus Query 552123 GTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTC 552182 || ||||| |||||||| ||| | || |||||| ||| ||||| ||| |||||| Sbjct 1638 GTTCTTGTGGGTGGATCGACACGTATACCTAAAGTTCAACAAATGGTAAAAGACTATTTC 1579 Query 552183 AATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCA 552242 || || ||| || ||||| | || ||||||||||| || ||||| | ||| || ||| Sbjct 1578 AACGGCAAAGAACTAAATCGCGGCGTCAATCCAGATGAAGCCGTTGCATTTGGAGCTGCA 1519 Query 552243 ATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTA 552302 |||||| || || | || ||||| | | |||| || | | Sbjct 1518 GTTCAAGGTGCAATAATAAGCGG------TGATGCTTCCGTGCCGGATATGATAGTGTTG 1465 Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 ||||| || || | || | ||| | ||||| || || ||| | ||||| || || ||| Sbjct 1464 GATGTGACACCGTTGTCATTGGGTATTGAAACTGTCGGCGGTGTGATGACCAAACTGATC 1405 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 || | |||| | ||||||| |||||||| | ||||| || || ||| ||| Sbjct 1404 GAAAAAAATTCGCCTATTCCGATCAAAAAATCGCAAATATTTAGCACACATCAAGACAAT 1345 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 || |||| || ||| ||| | | | |||||||| | | ||| |||||||| Sbjct 1344 CAGCCTGCGGTGCTAATCCAAGTCTATCAAGGAGAACGTGCCATGACTGCAGATAATAGA 1285 Query 552483 CAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 | | | || || || | | || || ||||| |||||||| ||||| || |||||| Sbjct 1284 CTATTGGGAACATTCGAGCTGACTGGAATCCCTCCGGCTCCTCGAGGAGTCCCTCAAATT 1225 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || || || | || | || | ||| | |||||| ||| |||||| Sbjct 1224 GAAGTGACATTTGAGGTTGACGTGAACTGTATTCTCAATGTGGAAGCTCATGATAA 1169 >seq23503 Length=11782 Score = 104 bits (114), Expect = 2e-16 Identities = 253/383 (66%), Gaps = 13/383 (3%) Strand=Plus/Minus Query 552207 GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA 552266 || ||||||||||| | |||||| || ||||||||||||| || | | || ||| Sbjct 8945 GTGAATCCAGATGAAGTCGTTGCCATGGGAGCCGCAATTCAAGGAGGTGTGATT---GGA 8889 Query 552267 CAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 | |||| | | |||||| | | ||||||||||| | || | ||| Sbjct 8888 ---------GGAAAATTGGACGGTATTGTGTTGATTGATGTTACTCCATTGTCATTGGGT 8838 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | |||||| | || ||| | | || | | || || | ||||||| ||||||| Sbjct 8837 ATTGAAACAATGGGTGGTGTATTTACACGTTTGATTGAGAAAAATACTGCTATTCCGACA 8778 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || ||||| |||||| || | |||||||| || || ||| || || Sbjct 8777 AAGAAATCGGAAGTATTTAGCACTGCCGCTGATAATCAGACACAAGTGGGCATTAAAGTT 8718 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 | | |||||||| || || | || || ||||| | | || ||| |||| | Sbjct 8717 TATCAAGGAGAACGAGAAATGGCTGCTGACAATAAATATTTGGGCCATTTCGATTTGGTT 8658 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || || || ||||||||||| ||| || ||||||||||| |||| ||| | ||||| Sbjct 8657 GGAATCCCACCTGCTCCTCGAGGACGTCCACAAATTGAAGTCTCTTT-GATTTGGATGCA 8599 Query 552567 AATGGAATTTTGAATGTGACTGC 552589 ||||| |||||||||||| |||| Sbjct 8598 AATGGCATTTTGAATGTGTCTGC 8576 >seq10766 Length=3687 Score = 102 bits (112), Expect = 7e-16 Identities = 131/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 1047376 GATATTTGTCAACTTGGTGTTGATCAAAGAAAAGTTAATATGTTAGCCATTGAATATGCT 1047435 |||||||||||| | || | || |||||||||||||||||| | || ||||| ||| Sbjct 2124 GATATTTGTCAATTGGGAATGGACCAAAGAAAAGTTAATATGCTCGCACGCGAATACGCT 2065 Query 1047436 AAACGTA--ATAATTTAAAAACACCAATTATTTTATCTCACCATATGTTAATGGGATTGA 1047493 ||| | | || ||| | | || ||| | | || || |||||| | |||||| ||| Sbjct 2064 --ACGAAACAGAAATTACGATCGCCGATTGTCATTTCCCATCATATGCTTATGGGACTGA 2007 Query 1047494 AAGGTTCCAAAAATAAAATGAGTAAATCTGATCCTGAAAATGCCATATTTATGGAAGAT 1047552 ||| | || | |||||||| ||||| ||||| || | |||||| || ||||||||| Sbjct 2006 AAGAAGGCCAAGAAAAAATGAGCAAATCCGATCCCGATAGTGCCATCTTCATGGAAGAT 1948 >seq19824 Length=8713 Score = 98.7 bits (108), Expect = 8e-15 Identities = 120/160 (75%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 ||| || | ||||||||| |||||||| | | ||| || || |||||||||||||| || Sbjct 6173 ATCCTCCAATTGTTTTCCCGCAAAAATTAAACGTTGTTGCTCTGGAGGAATTCCTTCCTT 6232 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTA 563436 |||||||||||| ||| || || || || || || || || || || | ||| Sbjct 6233 ATCTTGAATTTTGGCTTTGACATTCTGGATGGTGTC-GT-TGGGTTCAACGTCCAACGTA 6290 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATAG 563476 | ||||| ||||| | ||| |||||||| |||||||||| Sbjct 6291 ATTGTTTTTCCAGTCAAAGTCTTAACGAAGATTTGCATAG 6330 >seq45910 Length=1805 Score = 96.9 bits (106), Expect = 3e-14 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 563278 GTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCG 563337 || |||||||| ||||||||| || || ||||||| |||||| | ||||||||| Sbjct 638 GTGCTTTCTTTTTGAATATTGTAGTCGCTTAAAGTTCTTCCATCTTCCAATTGTTTTCCC 579 Query 563338 GCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTT 563397 |||||||| | | || || ||||| || |||||||| |||||||||||||| || Sbjct 578 GCAAAAATCAAGCGCTGTTGTTCAGGGGGTATTCCTTCCTTATCTTGAATTTTCGCCTTG 519 Query 563398 ACTGCCTCAATTGTATCAGTGTG-AGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGT 563456 || | || || ||| || | ||| || | |||| ||||||||||| | ||| Sbjct 518 ACATTTTGGATCGTGTCATTGGGCTCGACA-TCTAAGGTAATGGTTTTACCAGTTAAAGT 460 Query 563457 TTTAACGAAA 563466 || |||||| Sbjct 459 CTTCACGAAA 450 >seq35091 Length=3122 Score = 95.1 bits (104), Expect = 1e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 563278 GTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCG 563337 || |||||||| ||| ||||| || || ||||||| ||||| | ||||||||| Sbjct 1259 GTGCTTTCTTTTTGAATGTTGTAGTCGCTTAAAGTTCTTCCGTCTTCCAATTGTTTTCCT 1200 Query 563338 GCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTT 563397 |||||||| | | ||| || ||||| || |||||||| ||||||||||||||| ||| Sbjct 1199 GCAAAAATCAAGCGTTGTTGTTCAGGGGGGATTCCTTCCTTATCTTGAATTTTTGCTTTG 1140 Query 563398 AC 563399 || Sbjct 1139 AC 1138 >seq35349 Length=2359 Score = 91.5 bits (100), Expect = 1e-12 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||| || | ||| || || ||||| ||||| || ||||||||| | ||| | Sbjct 1139 ACGGAGAACCAAATGCAGCGTGCTTTCCTTTTGG--ATGTTGTAATCACTCAAAGTGCGG 1082 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||| ||| ||| | ||||| || || | |||||| ||||||||||| |||||| Sbjct 1081 CCGTCTTCAAATTGCTTTTCCGCAAAGATCAGACGTTGCTGTTCAGGAGGAATACCTTCT 1022 Query 563377 TTATCTTGAATTTTTTGTTTTAC 563399 || ||||| |||||| ||| || Sbjct 1021 TTGTCTTGGATTTTTGCTTTGAC 999 >seq21249 Length=17112 Score = 91.5 bits (100), Expect = 1e-12 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 550352 AAAATGAAACAAACAGCC-AGTGCTTTTGTTGG-TCAAGAAGTTACGGATGCAGTAATAA 550409 ||||||||| |||||||| ||| | | ||||| |||| |||| || ||||| || | | Sbjct 180 AAAATGAAAGAAACAGCCGAGT-CGTACGTTGGATCAA-AAGTCACCGATGCTATAGTTA 123 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||| || |||||||| |||||| | ||||| || ||||||||||| |||| Sbjct 122 CCGTGCCAGCCTACTTTAATGATTCACAAAGACAAGCAACCAAAGATGCTGGTGCCATTG 63 Query 550470 CTGGACTTAATGT 550482 |||| | ||||| Sbjct 62 CTGGCTTGAATGT 50 >seq45884 Length=997 Score = 86.0 bits (94), Expect = 5e-11 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||| || | ||| | || ||||| ||||| || ||||||||| | ||| | Sbjct 929 ACGGAGAACCAAATGTAACGTGCTTTCCTTTTGG--ATGTTGTAATCACTCAAAGTGCGA 872 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||| ||| ||||| ||||| || || | |||||| ||||||||||| |||||| Sbjct 871 CTGTCTTCAAATTGCTTTCCCGCAAAGATCAGACGTTGCTGTTCAGGAGGAATACCTTCT 812 Query 563377 TTATCTTGAATTTTTTGTTTTAC 563399 || ||||| || ||| ||| || Sbjct 811 TTGTCTTGGATCTTTGCTTTGAC 789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026608990931410