Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq16931 105 2e-18 seq7700 82.4 2e-11 >seq16931 Length=1075 Score = 105 bits (116), Expect = 2e-18 Identities = 182/260 (70%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 21199 CCTGCTGGTGGTGGACTACCTGCAGCTGCTG-GAGAGCTCCGGCAAG--TCCACTCGCAC 21255 |||||| ||||| ||||| |||||||| ||| || ||| || ||||| | || || | Sbjct 782 CCTGCTCGTGGTCGACTATCTGCAGCT-CTGCGAAAGCACCCGCAAGGATGGACGCGTGC 724 Query 21256 CGAGGACGTCAGCGACATGTCCCGCCAGTGCAAGCTGCTGGCGATGGAGCTTGGTATCCC 21315 |||| || ||||| || ||| |||| | |||||| ||||| | | | || Sbjct 723 --AGGAAGTGAGCGAGGTGAGCCGGGGCCTCAAGGCGTTGGCGAAAGAGCTGGATGTGCC 666 Query 21316 CGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACCGAT 21375 || | | ||| || ||||||| ||| | ||| ||||| | |||| || ||| Sbjct 665 GGTCCTGGCGCTTTCCCAGCTCAGTCGCGATGTCGAGAAGCGGGAGGACAAACGGCCGCG 606 Query 21376 GATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGT 21435 | ||||| || ||||| || || | ||||||||||||||||||||| | |||||||| Sbjct 605 CCTTTCGGATCTCCGCGACTCGGGCACCATCGAGCAGGACGCCGATGTGGTGATGTTCGT 546 Query 21436 GTACCGCGACGAGGTCTACC 21455 || || || ||| ||||| Sbjct 545 CTATCGTGAGGAGTACTACC 526 >seq7700 Length=1314 Score = 82.4 bits (90), Expect = 2e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACC 47593 || ||||||||||||||||||| || ||||||||||||||||||||||| | |||||| Sbjct 58 ACTGGATTTAGGTTCCAGCGCCTCACGGCGTGAGAGTTCGAGTCTCTCCTTTCGCACC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157015606360026