Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq19397 105 5e-18 seq28421 91.5 1e-13 seq45780 87.8 1e-12 seq40549 87.8 1e-12 seq45884 86.0 5e-12 seq38859 86.0 5e-12 seq35091 86.0 5e-12 seq19166 86.0 5e-12 seq14659 86.0 5e-12 >seq19397 Length=4183 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||||||||| | ||||| |||||||| || |||||||| | | |||| || Sbjct 4105 CGCAACACCAAATGCAAGGTGCTTTCTTTTTGGATGTTGTAATCGCTCAAAGTTCGGCCG 4046 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| ||||| |||||||| |||| || ||||| || | ||||| || |||||| Sbjct 4045 TCCTCCAATTGCTTGCCGGCAAAGATCAAACGTTGTTGCTCAGGGGGAATTCCTTCCTTG 3986 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||| || ||| || | | || | ||| || |||| |||||| Sbjct 3985 TCCTGAATTTTCGCTTTGACGTTTTGGATGGTGTCGTTGGGCTCAACATCCAACGTAATT 3926 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAA 48757 |||||||| |||||||| || || || Sbjct 3925 GTTTTTCCAGTCAAAGTCTTCACGAA 3900 >seq28421 Length=944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 18/211 (9%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| |||||| ||||||||||| ||||||||||| || ||||| ||| | | Sbjct 301 CGCAGCACCAAGTGTAGCGTGCTTTCTTTTTGAATGTTATAATC------ACT--CAAGG 352 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| || || ||||||||||| | ||| ||||| || | |||| ||| |||||| Sbjct 353 TCTTCCAATTGTTTTCCGGCAAATATTAATCGTTGTTGCTCTGGAGGAATGCCTTCCTTG 412 Query 48672 TCGCTAATCTTTTGTTTTACA-----GAACCCACAGACTCTGACGCCTCCACCTCCACCG 48726 || || ||| | ||| | ||| | | || | ||| || |||| || Sbjct 413 TCTTGGAT-TTTGGCTTTCAAGTTTTGAATC----GTATCATTGGGCTCAACATCCAACG 467 Query 48727 TAATCGTTTTTCCCGTCAAAGTTTTTACAAA 48757 |||| |||||||| || |||||||| || || Sbjct 468 TAATTGTTTTTCCGGTTAAAGTTTTCACGAA 498 >seq45780 Length=809 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| ||||| || ||||||| || || || ||||||||||||||||| Sbjct 531 CCACCTCTTAAACGCAAGACTAAATGTAAAGTACTTTCCTTTTGAATATTGTAATCGCTC 590 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| |||| ||||| ||||| || || || |||| ||||||||| || | ||| Sbjct 591 AATGTGCGACCGTCTTCCAATTGCTTGCCAGCGAAAATCAATCGCTGTTGCTCAGGAGGA 650 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || || || ||| || || ||| | || || | ||| || Sbjct 651 ATGCCTTCTTTATCCTGAATTTTGGCCTTAACATTTTGGATAGTATCGTTAGGCTCTACG 710 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAA 48757 |||| ||| ||||| || || ||||| ||||| || || Sbjct 711 TCCAACGTTATCGTCTTGCCGGTCAAGGTTTTCACGAA 748 >seq40549 Length=748 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| ||||||||||| |||| || || || |||||||| ||||| || Sbjct 355 CCACCTCTTAAGCGCAACACCAAGTGTAAAGTACTTTCCTTTTGAATGTTGTAGTCGCTC 296 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| |||| ||||| ||||| || || || |||| ||||||||| || | ||| Sbjct 295 AATGTGCGACCGTCTTCCAATTGCTTGCCAGCGAAAATCAATCGCTGTTGCTCAGGAGGA 236 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || || || ||| || ||| ||| | || || | ||| || Sbjct 235 ATGCCTTCTTTATCCTGAATTTTGGCTTTAACATTTTGGATAGTATCGTTGGGCTCTACG 176 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAA 48757 |||| ||| ||||| || || ||||| ||||| || || Sbjct 175 TCCAACGTGATCGTCTTACCGGTCAAGGTTTTCACGAA 138 >seq45884 Length=997 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||||||||||| | ||||| || |||||||| || |||||| | | |||| | Sbjct 568 CGCAACACCAAATTCAAGGTGCTTTCCTTTTGAATGTTATAATCACTCAAAGTTCGGCCA 509 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || | ||| ||||| |||||||| |||| |||||||| || | ||||| || || ||| Sbjct 508 TCCTACAATTGCTTGCCGGCAAAGATCAAACGCTGTTGCTCTGGGGGAATTCCTTCATTG 449 Query 48672 TC 48673 || Sbjct 448 TC 447 >seq38859 Length=993 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||||||||| | |||||| || ||||| |||||||||||| | ||| | Sbjct 838 CGCAACACCAAATGCAACGTGCTTTCCTTTTGGATATTGTAATCACTCAAGGTTCTTCCA 779 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| ||||| || ||||| || | |||||||| || | |||| || |||||| Sbjct 778 TCTTCCAATTGCTTTCCAGCAAAGATTAAGCGCTGTTGCTCTGGTGGAATACCTTCCTTG 719 Query 48672 TC 48673 || Sbjct 718 TC 717 >seq35091 Length=3122 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 || |||||||| |||| |||||| ||||||||||| ||||| || || | ||| || Sbjct 1277 CGTAACACCAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCTTAAAGTTCTTCCG 1218 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| || || || ||||| |||| || ||||| || | ||| | || ||||| Sbjct 1217 TCTTCCAATTGTTTTCCTGCAAAAATCAAGCGTTGTTGTTCAGGGGGGATTCCTTCCTTA 1158 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||| ||| ||| ||| | | || || || || || | ||||| Sbjct 1157 TCTTGAATTTTTGCTTTGACATTTTGGATCGTGTCGTTGGCTTCAACATCTAAGGTAATG 1098 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAA 48758 ||||| || |||||||| || || ||| Sbjct 1097 GTTTTGCCGGTCAAAGTCTTCACGAAA 1071 >seq19166 Length=5045 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 || |||||||| |||| |||||| ||||||||||| ||||| || || | ||| | Sbjct 4763 CGTAACACCAAGTGTAACGTGCTTTCTTTTTGAATGTTGTAGTCGCTTAAAGTTCTTCCA 4822 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| || || || ||||| ||||| || ||||| || | ||| | || |||||| Sbjct 4823 TCTTCCAATTGTTTTCCTGCAAAAATCAGGCGTTGTTGTTCAGGGGGGATTCCTTCCTTG 4882 Query 48672 TC 48673 || Sbjct 4883 TC 4884 >seq14659 Length=7011 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || |||| |||||||| | || || ||||| ||||| ||||||||||| Sbjct 4550 GCCTCCTCTGAGACGCAGTACCAAATGCAAAGTACTATCTTTCTGAATGTTGTAATCAGA 4491 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | | || |||| ||||| || ||||| || || || |||||||| | || Sbjct 4490 TAACGTCCTGCCATCTTCCAGTTGCTTTCCAGCAAAGATTAGGCGTTGTTGATCGGGTGG 4431 Query 48659 AACGCCCTCCTTGTC 48673 | |||||||||||| Sbjct 4430 GATGCCCTCCTTGTC 4416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380701710224307