Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq30120 203 4e-47 seq11046 165 1e-35 >seq30120 Length=782 Score = 203 bits (224), Expect = 4e-47 Identities = 398/576 (69%), Gaps = 23/576 (4%) Strand=Plus/Plus Query 83248 CGAAGGCCTGATCGATGAACGCGTCTTCGAGATCGACCATGGCGCGGCAGGCGTCATAGA 83307 ||||||| | |||||||| ||||| ||| ||||||| |||| ||||||| |||||| Sbjct 193 CGAAGGCGAGGTCGATGAAGGCGTCCTCGTGATCGACGATGGTCGAGCAGGCGACATAGA 252 Query 83308 T---GCGCTTCTTGGTCTCGTCGTTCCAGGAGCGCGGGTGCTCCTTGATCAACTCGTGCA 83364 | ||||| | || || ||| ||||| ||||| ||||| ||| || | | | Sbjct 253 TCTCGCGCTGCA--GT-TCCTCGGTCCAGACTTCCGGGTTCTCCTGGATGAAGGTGCGGA 309 Query 83365 GGAGCTTGATCATCGACTCCACGTGATGGCTCTCGTCGCGGATCGACCACTCGACGATCG 83424 ||||||| ||||| | ||| | |||||||||| | |||||| |||||| Sbjct 310 ACAGCTTGACGATCGAGTTGCAGTGCAGCGTCTCGTCGCGCACCGACCAGGTCACGATCT 369 Query 83425 TGGTCATGCCCTTCATGCGATTGCGACGCTGGAAGGACATCAGCAGAGCGAAGGACGAGA 83484 | |||||||||||| ||| ||| ||||| |||||||| |||||| | || Sbjct 370 GGCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATGGCGAAGCTGGCGA 429 Query 83485 AAAGCTGCATCCCCTCGCCGAAGGCCGAGAACACGGCGA---TGTCGACCATCAGGTCGG 83541 | ||||||| |||||| |||||| ||||||||| | | | | | || ||||| Sbjct 430 ACAGCTGCAGGCCCTCGGTGAAGGCGCCGAACACGGCCAGCGTCTTGGCGAT---GTCGG 486 Query 83542 CGATCGAGTTGCCGCTG--TCCCGATTGAACATGTACTCGTGCTTCTCGCGCATCGCCTC 83599 | |||||| | || || ||| || |||||| |||| ||| || |||| ||| Sbjct 487 CCTTCGAGTCGACGTTGAAGCCC---TG--CATGTAGTCGTACTTGTCCTTCATCTCCTT 541 Query 83600 GTAGTCGAGGAAGGCGCGGAACTCGACCTCGGGCAGGCCCAGGGTGTCGATCAGCGTCG- 83658 | | ||||||| || | ||||| |||||||| ||| | ||||||| ||| || | Sbjct 542 GACGGTGAGGAAGACGGAGTACTCGGTCTCGGGCATGCCGATCGTGTCGAGCAG-GTGGC 600 Query 83659 AGTAGGCGTCGATGTGGTTGGCCT-CGGCGGCGATGAACGCGCCCAGCATCATCCGCACT 83717 ||||||| | | ||| | || | || ||| ||| ||| ||||||||||| ||||| Sbjct 601 TGTAGGCGGCAACGTGCACCGTCTCCATCGCCGA-GAAGGCGGCCAGCATCATCTGCACT 659 Query 83718 TCCGGGTGCGGGAAGCGCGGGCCGTACTTCTCGAAGTAGCCGCGCGCCACGTCGACGTCG 83777 || | || |||| | || || | | | ||||| | ||| ||||| ||| Sbjct 660 TCGGTCGGCTTGAAGACCCGGGAATAGTGCCGCATGTAGCAGTTGTTCACCTCGACATCG 719 Query 83778 GCCTGGGTGAAGAACCGGAAGAGTTGCGTCAGCAGG 83813 |||||||||||||| ||||||| |||||||||||| Sbjct 720 GCCTGGGTGAAGAAGCGGAAGATCTGCGTCAGCAGG 755 Score = 93.3 bits (102), Expect = 6e-14 Identities = 133/183 (73%), Gaps = 11/183 (6%) Strand=Plus/Plus Query 82989 TCCGTCGAGCGCTGCTCGAAGAAGTTGGTGTGGGTCGG-GGCGTTCATGATCCAGTCGAG 83047 || |||||||| | |||||||||||||||||| ||| ||||||||| ||| ||| | Sbjct 3 TCGGTCGAGCGGTTCTCGAAGAAGTTGGTGTGC-TCGATGGCGTTCATCATCTGGTCCAT 61 Query 83048 CCAGTCGAACGGATTGTCCTTGACG-CCG-----TAATTGGGCTTCAAGCCCAGTTGCAG 83101 ||| | ||| || |||| || ||| || |||||| || || || || Sbjct 62 CCACGGCAGCGGGTT---CTTGGCGTCCGCGCGATAGATGGGCTGCAGGCTGAGCTGGGT 118 Query 83102 CAGCCGGCGGTCGGCGATGTAGCGGATGTACTGCTTGGTGTCCTCGGGCGTGACGCCCTC 83161 ||| |||||||||||||||||||||||||| ||||| ||| | ||| | |||||| Sbjct 119 CAGGCGGCGGTCGGCGATGTAGCGGATGTAGCGCTTGACGTCGGTCGCCGTCATGCCCTC 178 Query 83162 GAT 83164 ||| Sbjct 179 GAT 181 >seq11046 Length=996 Score = 165 bits (182), Expect = 1e-35 Identities = 364/539 (68%), Gaps = 14/539 (3%) Strand=Plus/Minus Query 84549 CGAACGAGCCCGACAGGGTCTTGTGCAGGAAGGTGTTGGCCGGGATCGGCTCGATCGACG 84608 |||| |||||||||||||||||||| | || |||||||| ||||||||| | Sbjct 708 CGAAGGAGCCCGACAGGGTCTTGTGGTTGTAGACGTTGGCCGCCGACGGCTCGATGCCGG 649 Query 84609 GCGAGGTGCCTCCGCAGAGGATCGAGGACGAGGCGTTGGGCGCCACGGCCAGCTTGTGGG 84668 |||||| ||| ||||||| ||||||| ||| ||| | ||||| | || ||||||| || Sbjct 648 GCGAGGCGCCGCCGCAGATGATCGAGATCGACGCGGTCGGCGCGATCGCGAGCTTGTTGG 589 Query 84669 CGAACCGCTC------GCCCGTGCCTTCCATGTCCGGCGCCTCGCCGCGCTCCTTGCCCA 84722 ||| || || ||| | || ||||| | ||||||| |||||||| | Sbjct 588 AGAAGCGGTCCTGGAAGCCGAAATCGGCCGCATCCGGGCACGCGCCGCGTTCCTTGCCGA 529 Query 84723 GCAGCAGGGAAGCCGCGTCGGCCTGCTTGCGCATGTGGGCGAACAGTTCCAGGTTCAGC- 84781 || || || ||| ||||| ||| ||| ||||| ||||| | | |||| | Sbjct 528 GCGTCATCGACGCCTCGTCGCACTGACCGCGGATGTGCTTGAACATCTTCTTGTTCCACA 469 Query 84782 CGGCGGGCGGCGTGACTCTCGAACGGGATGTCCAGCATCTGGAGCAGCGAGTGGAAGCCG 84841 | || | | | | |||| ||| ||| | ||| || | ||||||||||| Sbjct 468 CCTTGGCCATCACGGAT-TCGAGCGGAATGCCGTTGCCCTGCAGGAAGGAGTGGAAGCCC 410 Query 84842 AGCAGGCCCAGGCCCACCGACCGTTCGCGCACGGCGCTGTAGGCGGCGCGGTGCATCTCG 84901 | | ||| ||||| ||||| || ||||||| ||| |||| ||||| | ||| Sbjct 409 ATGACGCCGAGGCCGACCGAGCGCTCGCGCATCGCGGCATAGGTCGCGCGCGCGAAGTCG 350 Query 84902 T--CCGGCGCGTTGTCGATGAACACCTGGAGGCAGTTGTCCAGCATGCGCAGCAGGTCTT 84959 |||||| |||||||||| ||| || |||||| || | ||||| || ||| | Sbjct 349 GAGCCGGCGG--TGTCGATGAAGCTCTGCAGCACGTTGTCGAGGAAGCGCATCACGTCCT 292 Query 84960 CGATGAAGGTCGGGTGATCCCGCCACTCCGGCCACTTCTCGGCGTTGACGCTGGAGAGGC 85019 ||||||||||||| || || |||| || | | ||||| |||| || |||| Sbjct 291 CGATGAAGGTCGGATGCTCGTGCCATTCGAGATAGGTCTCGAGATTGAGCGACGACAGGC 232 Query 85020 AGCAGACGGCGGTCCGCATCTTGCCGAAGAT-GTCGCGGCCCGAGCCCAGCATGATCTC 85077 |||| |||||||| ||| ||||||| ||| |||| ||| | |||| ||||||| Sbjct 231 AGCACACGGCGGTGCGCTGCTTGCCG-TGATGGTCGATGCCGGTCGGCAGCGTGATCTC 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689705680918800