Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq11046 185 2e-41 seq30120 147 4e-30 seq38750 100 5e-16 seq40398 91.5 3e-13 seq17522 89.7 9e-13 >seq11046 Length=996 Score = 185 bits (204), Expect = 2e-41 Identities = 375/546 (69%), Gaps = 18/546 (3%) Strand=Plus/Minus Query 113568 GAAGGAGCCCGACAGCGTCTTATGCAGATAGGCGTTGGCGCGCC-ACGGCTCGATCGACG 113626 ||||||||||||||| ||||| || ||| ||||||| |||| |||||||||| | Sbjct 707 GAAGGAGCCCGACAGGGTCTTGTGGTTGTAGACGTTGGC-CGCCGACGGCTCGATGCCGG 649 Query 113627 GCGAGGTATTGCCGCAGAGGATAGACGACGACGCGTTGGGAGCGATCGCCATCTTGTGGG 113686 |||||| |||||||| ||| || ||||||| | || |||||||| | ||||| || Sbjct 648 GCGAGGCGCCGCCGCAGATGATCGAGATCGACGCGGTCGGCGCGATCGCGAGCTTGTTGG 589 Query 113687 CGAAGCGCTCGCCCGTGCCGATCATGTCCG-----GCGC-CTCGCCGCGTTCGGCGCCCA 113740 |||||| || ||||| | ||| | || | |||||||||| ||| | Sbjct 588 AGAAGCGGTCCTGGAAGCCGAAATCGGCCGCATCCGGGCACGCGCCGCGTTCCTTGCCGA 529 Query 113741 GCTTCAGAGAAGCGGCATCCGCCAGGGTGCGGATGTGCTTGAAGATCGCACGGTTC---A 113797 || ||| || || | || | | ||||||||||||||| ||| |||| | Sbjct 528 GCGTCATCGACGCCTCGTCGCACTGACCGCGGATGTGCTTGAACATCTTCTTGTTCCACA 469 Query 113798 CGTTGCGAGCCTTATGCGACTCGAACCGGAT-CATATGCTTCTGAAGATAGGCGTGGAAG 113856 | ||| ||| | || |||| | | || | ||| ||| || ||| ||||||| Sbjct 468 CCTTG---GCCATCACGGATTCGAGCGGAATGCCGTTGCC-CTGCAGGAAGGAGTGGAAG 413 Query 113857 CCCAGCAGGCCCAGGCCGACCGAACGCTCCTGCGTAGCCGAGTAGATCGCGTAGGCCAAC 113916 |||| | ||| ||||||||||| ||||| || | || | ||| ||||| || || Sbjct 412 CCCATGACGCCGAGGCCGACCGAGCGCTCGCGCATCGCGGCATAGGTCGCGCGCGCGAAG 353 Query 113917 GCCG-GCGGAGCGTTGTCGATGAACACCTGGAGGCAGTTGTCCAGCATACGCATCAGGTC 113975 | | || | ||| |||||||||| ||| || |||||| || | ||||||| ||| Sbjct 352 TCGGAGCCG-GCGGTGTCGATGAAGCTCTGCAGCACGTTGTCGAGGAAGCGCATCACGTC 294 Query 113976 TTCGATGAAGTGTGGGTCATCGACCCACTCGTCGAACTTCTCGGCGTTGACGCTCGACAG 114035 ||||||||| || | ||| ||| ||| | ||||| |||| |||||| Sbjct 293 CTCGATGAAGGTCGGATGCTCGTGCCATTCGAGATAGGTCTCGAGATTGAGCGACGACAG 234 Query 114036 GCAGCAGACCGCCGTACGCTTCTTGCCTTGATCATCGCGCCCGGTCGCCAGCGTGATCTC 114095 |||||| || || || |||| |||||| |||| ||| ||||||| |||||||||||| Sbjct 233 GCAGCACACGGCGGTGCGCTGCTTGCCGTGATGGTCGATGCCGGTCGGCAGCGTGATCTC 174 Query 114096 GGTGCA 114101 | |||| Sbjct 173 GCTGCA 168 >seq30120 Length=782 Score = 147 bits (162), Expect = 4e-30 Identities = 312/466 (67%), Gaps = 7/466 (2%) Strand=Plus/Plus Query 112045 TCCGTCGAGCGCTGCTCGAAGAAGTTGGTGTGGGTCGG-GGCGTTCATGATCCAGTCGAG 112103 || |||||||| | |||||||||||||||||| ||| ||||||||| ||| ||| | Sbjct 3 TCGGTCGAGCGGTTCTCGAAGAAGTTGGTGTGC-TCGATGGCGTTCATCATCTGGTCCAT 61 Query 112104 CCAGTCGAACGGATTT---GCCTTCACGCCATAGTTAGGCTTCAGCCCGAGTTGCAGCAG 112160 ||| | ||| || || | | ||| |||| | |||| ||| | ||| || ||| Sbjct 62 CCACGGCAGCGGGTTCTTGGCGTCCGCGCGATAGATGGGCTGCAGGCTGAGCTGGGTCAG 121 Query 112161 GCGGCGGTCCGCGATGTAGCGGATGTATTCCTTGGCCTCGGCGGCGGTGAAACCTTCGAC 112220 ||||||||| ||||||||||||||||| |||| | |||| || || | || |||| Sbjct 122 GCGGCGGTCGGCGATGTAGCGGATGTAGCGCTTGACGTCGGTCGCCGTCATGCCCTCGAT 181 Query 112221 TTCGCCCAGGTTGGTGCATTGGTCGATGAACGCATCTTCCAGCGTGACCATGGCGCGGCA 112280 ||||||| | | | |||||||||| || || || | ||| |||| ||| Sbjct 182 GCCGCCCAGTTCGAAGGCGAGGTCGATGAAGGCGTCCTCGTGATCGACGATGGTCGAGCA 241 Query 112281 GGCATCGTAGA-CACGCTTCTTGGTTTCGTCGTTCCAGGCGCGCGGGTGTTCCTTGATCA 112339 ||| | |||| | ||| || ||| ||| ||||| | ||||| |||| ||| | Sbjct 242 GGCGACATAGATCTCGC-GCTGCAGTTCCTCGGTCCAGACTTCCGGGTTCTCCTGGATGA 300 Query 112340 ACTCGTGCAGGAGCTTGATCATCGATTCGACGTGCAGCGNNNNNNNNNNNNNNNNNNACT 112399 | | | | ||||||| ||||| | | |||||||| | Sbjct 301 AGGTGCGGAACAGCTTGACGATCGAGTTGCAGTGCAGCGTCTCGTCGCGCACCGACCAGG 360 Query 112400 CGACGATCGTGGTCATGCCCTTCATAAGGCCACGGCGTTGGAAGCTCATCAGCAGCGCGA 112459 |||||| | |||||||||||| | ||| ||||| ||||||||| |||| Sbjct 361 TCACGATCTGGCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATGGCGA 420 Query 112460 AGCTGGAGAAGAGTTGCATGCCTTCGCCGAAGGCGCTGAAGACGGC 112505 |||||| ||| || |||| ||| ||| |||||||| ||| ||||| Sbjct 421 AGCTGGCGAACAGCTGCAGGCCCTCGGTGAAGGCGCCGAACACGGC 466 >seq38750 Length=1150 Score = 100 bits (110), Expect = 5e-16 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 132957 TTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGT 133016 ||||| |||||||||||||| |||||||||||| ||||||||||| ||||||| ||| Sbjct 872 TTTGACGCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTTGGT 931 Query 133017 TCAAATCCCTCCCCCGCATCCACAAGCT 133044 |||||||| |||||||| ||| || || Sbjct 932 TCAAATCCAGCCCCCGCAACCAAAATCT 959 >seq40398 Length=733 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||||| ||||||||||| |||| || ||||||||| Sbjct 258 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 199 Query 133023 CCCTCCCCCGCATCCACA 133040 || |||||||| ||||| Sbjct 198 CCTGCCCCCGCAACCACA 181 >seq17522 Length=1101 Score = 89.7 bits (98), Expect = 9e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 191935 GCGCATCCGCATGCGTCGCAAGACTCTCGGCGTCAGCCAGGAACAACTCGCCAGCGCGCT 191994 |||||| ||| ||| || | ||||||| | |||||||| | || | | ||| | Sbjct 213 GCGCATGCGCCAGCGGCGTACTCTTCTCGGCATGAGCCAGGAGAAGCTTGGGACAGCGGT 154 Query 191995 GGGTCTGACCTTCCAGCAGGTGCAGAAGTACGAGAAGGGCGGCAATCGCGTCAGCGCGAG 192054 || ||||||||||||||| | |||||||||||| |||| ||| || || || | || Sbjct 153 CGGCCTGACCTTCCAGCAGATCCAGAAGTACGAGCGGGGCTCCAACCGGATCGGCTCCAG 94 Query 192055 CAAGCTGCACGGCATCGGCAAATTCCTGGGCGTTCCGGTCGCCTTTTTCTTCGA 192108 | ||| || ||| ||| |||||| |||||| || ||| ||||||||| Sbjct 93 CCGCCTGTTCGAGTTCGCCAAGGTCCTGGACGTTCCCGTGTCCTATTTCTTCGA 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895197487562280