Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq30120 208 1e-48 seq11046 156 6e-33 >seq30120 Length=782 Score = 208 bits (230), Expect = 1e-48 Identities = 399/576 (69%), Gaps = 23/576 (4%) Strand=Plus/Plus Query 81965 CGAAGGCCTGATCGATGAACGCGTCTTCGAGGTCGACCATGGCGCGGCAGGCGTCATAGA 82024 ||||||| | |||||||| ||||| ||| | ||||| |||| ||||||| |||||| Sbjct 193 CGAAGGCGAGGTCGATGAAGGCGTCCTCGTGATCGACGATGGTCGAGCAGGCGACATAGA 252 Query 82025 T---GCGCTTCTTGGTCTCGTCGTTCCAGGAGCGCGGATGCTCCTTGATCAACTCGTGCA 82081 | ||||| | || || ||| ||||| ||| | ||||| ||| || | | | Sbjct 253 TCTCGCGCTGCA--GT-TCCTCGGTCCAGACTTCCGGGTTCTCCTGGATGAAGGTGCGGA 309 Query 82082 GGAGCTTGATCATCGACTCCACGTGATGGCTCTCGTCGCGGATCGACCACTCGACGATCG 82141 ||||||| ||||| | ||| | |||||||||| | |||||| |||||| Sbjct 310 ACAGCTTGACGATCGAGTTGCAGTGCAGCGTCTCGTCGCGCACCGACCAGGTCACGATCT 369 Query 82142 TGGTCATGCCCTTCATGCGGTTGCGGCGCTGGAAGGACATCAGCAGGGCGAAGGACGAGA 82201 | |||||||||||| |||| |||| ||||| |||||||| ||||||| | || Sbjct 370 GGCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATGGCGAAGCTGGCGA 429 Query 82202 AAAGCTGCATCCCCTCGCCGAAGGCCGAGAACACGGCGA---TGTCGACCATCAGGTCGG 82258 | ||||||| |||||| |||||| ||||||||| | | | | | || ||||| Sbjct 430 ACAGCTGCAGGCCCTCGGTGAAGGCGCCGAACACGGCCAGCGTCTTGGCGAT---GTCGG 486 Query 82259 CGATCGAGTTGCCGCTG--TCCCGATTGAACATGTACTCGTGCTTTTCGCGCATCGCCTC 82316 | |||||| | || || ||| || |||||| |||| ||| || |||| ||| Sbjct 487 CCTTCGAGTCGACGTTGAAGCCC---TG--CATGTAGTCGTACTTGTCCTTCATCTCCTT 541 Query 82317 GTAGTCGAGGAAGGCGCGGAACTCGACCTCGGGCAGGCCCAGGGTGTCGATCAGCGTCG- 82375 | | ||||||| || | ||||| |||||||| ||| | ||||||| ||| || | Sbjct 542 GACGGTGAGGAAGACGGAGTACTCGGTCTCGGGCATGCCGATCGTGTCGAGCAG-GTGGC 600 Query 82376 AGTAGGCGTCGATGTGGTTGGCCT-CGGCGGCGATGAACGCGCCCAGCATCATCCGCACT 82434 ||||||| | | ||| | || | || ||| ||| ||| ||||||||||| ||||| Sbjct 601 TGTAGGCGGCAACGTGCACCGTCTCCATCGCCGA-GAAGGCGGCCAGCATCATCTGCACT 659 Query 82435 TCCGGGTGCGGGAAGCGCGGGCCGTACTTCTCGAAGTAGCCGCGCGCCACGTCGACGTCG 82494 || | || |||| | || || | | | ||||| | ||| ||||| ||| Sbjct 660 TCGGTCGGCTTGAAGACCCGGGAATAGTGCCGCATGTAGCAGTTGTTCACCTCGACATCG 719 Query 82495 GCCTGGGTGAAGAACCGGAAGAGTTGCGTCAGCAGG 82530 |||||||||||||| ||||||| |||||||||||| Sbjct 720 GCCTGGGTGAAGAAGCGGAAGATCTGCGTCAGCAGG 755 Score = 102 bits (112), Expect = 1e-16 Identities = 135/183 (74%), Gaps = 11/183 (6%) Strand=Plus/Plus Query 81706 TCCGTCGAGCGCTGCTCGAAGAAGTTGGTGTGGGTCGG-GGCGTTCATGATCCAGTCGAG 81764 || |||||||| | |||||||||||||||||| ||| ||||||||| ||| ||| | Sbjct 3 TCGGTCGAGCGGTTCTCGAAGAAGTTGGTGTGC-TCGATGGCGTTCATCATCTGGTCCAT 61 Query 81765 CCAGTCGAACGGATTGTCCTTGACG-CCG-----TAGTTGGGCTTCAGGCCCAGTTGCAG 81818 ||| | ||| || |||| || ||| ||| |||||| ||||| || || Sbjct 62 CCACGGCAGCGGGTT---CTTGGCGTCCGCGCGATAGATGGGCTGCAGGCTGAGCTGGGT 118 Query 81819 CAGTCGGCGGTCGGCGATGTAGCGGATGTACTGCTTGGTGTCCTCGGGCGTGACGCCCTC 81878 ||| |||||||||||||||||||||||||| ||||| ||| | ||| | |||||| Sbjct 119 CAGGCGGCGGTCGGCGATGTAGCGGATGTAGCGCTTGACGTCGGTCGCCGTCATGCCCTC 178 Query 81879 GAT 81881 ||| Sbjct 179 GAT 181 >seq11046 Length=996 Score = 156 bits (172), Expect = 6e-33 Identities = 362/539 (67%), Gaps = 14/539 (3%) Strand=Plus/Minus Query 83266 CGAACGAGCCCGACAGAGTCTTGTGCAGGAAGGTGTTGGCCGGGATCGGCTCGATCGACG 83325 |||| ||||||||||| |||||||| | || |||||||| ||||||||| | Sbjct 708 CGAAGGAGCCCGACAGGGTCTTGTGGTTGTAGACGTTGGCCGCCGACGGCTCGATGCCGG 649 Query 83326 GCGAGGTGCCCCCGCAAAGGATCGAGGACGAGGCGTTGGGCGCCACGGCCAGCTTGTGGG 83385 |||||| ||| ||||| | ||||||| ||| ||| | ||||| | || ||||||| || Sbjct 648 GCGAGGCGCCGCCGCAGATGATCGAGATCGACGCGGTCGGCGCGATCGCGAGCTTGTTGG 589 Query 83386 CGAACCGCTC------GCCCGTGCCTTCCATGTCCGGCGCCTCGCCGCGCTCCTTGCCCA 83439 ||| || || ||| | || ||||| | ||||||| |||||||| | Sbjct 588 AGAAGCGGTCCTGGAAGCCGAAATCGGCCGCATCCGGGCACGCGCCGCGTTCCTTGCCGA 529 Query 83440 GCAGCAGGGAAGCCGCGTCGGCCTGCTTGCGCATGTGGACGAACAGTTCCAGGTTCAGC- 83498 || || || ||| ||||| ||| ||| ||||| ||||| | | |||| | Sbjct 528 GCGTCATCGACGCCTCGTCGCACTGACCGCGGATGTGCTTGAACATCTTCTTGTTCCACA 469 Query 83499 CGGCGGGCGGCGTGACTCTCGAACGGGATGTCCAGCATCTGGAGCAGCGAGTGGAAGCCG 83558 | || | | | | |||| ||| ||| | ||| || | ||||||||||| Sbjct 468 CCTTGGCCATCACGGAT-TCGAGCGGAATGCCGTTGCCCTGCAGGAAGGAGTGGAAGCCC 410 Query 83559 AGCAGGCCCAGGCCCACCGACCGTTCGCGCACGGCGCTGTAGGCGGCGCGGTGCATCTCG 83618 | | ||| ||||| ||||| || ||||||| ||| |||| ||||| | ||| Sbjct 409 ATGACGCCGAGGCCGACCGAGCGCTCGCGCATCGCGGCATAGGTCGCGCGCGCGAAGTCG 350 Query 83619 T--CCGGCGCGTTGTCGATGAACACCTGGAGGCAGTTGTCCAGCATGCGCAGCAGGTCTT 83676 |||||| |||||||||| ||| || |||||| || | ||||| || ||| | Sbjct 349 GAGCCGGCGG--TGTCGATGAAGCTCTGCAGCACGTTGTCGAGGAAGCGCATCACGTCCT 292 Query 83677 CGATGAAGGTCGGGTGATCCCGCCACTCCGGCCACTTCTCGGCGTTGACGCTGGAAAGGC 83736 ||||||||||||| || || |||| || | | ||||| |||| || |||| Sbjct 291 CGATGAAGGTCGGATGCTCGTGCCATTCGAGATAGGTCTCGAGATTGAGCGACGACAGGC 232 Query 83737 AGCAGACGGCGGTCCGCATCTTGCCGAAGAT-GTCGCGGCCCGAGCCCAGCATGATCTC 83794 |||| |||||||| ||| ||||||| ||| |||| ||| | |||| ||||||| Sbjct 231 AGCACACGGCGGTGCGCTGCTTGCCG-TGATGGTCGATGCCGGTCGGCAGCGTGATCTC 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 699999938751960