Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq30120 255 8e-63 seq11046 196 7e-45 >seq30120 Length=782 Score = 255 bits (282), Expect = 8e-63 Identities = 531/778 (68%), Gaps = 26/778 (3%) Strand=Plus/Plus Query 83160 TCGGTCGAGCGCTGCTCGAAGAAGTTGGCGTGGGTCGG-GGCGTTCATGATCCAGTCGAG 83218 ||||||||||| | |||||||||||||| ||| ||| ||||||||| ||| ||| | Sbjct 3 TCGGTCGAGCGGTTCTCGAAGAAGTTGGTGTGC-TCGATGGCGTTCATCATCTGGTCCAT 61 Query 83219 CCAGTCGAAGGGGTTCTC--CTTCTGGCCG-TAGTTGGGCTTCATGCCCAGTTGCAGCCA 83275 ||| | ||||||| | || | || ||| |||||| || || || || | Sbjct 62 CCACGGCAGCGGGTTCTTGGCGTCCGCGCGATAGATGGGCTGCAGGCTGAGCTGGGTCAG 121 Query 83276 CCGGCGGTCGGCGATGTAGCGGATGTACTTCTTGGTGTCCTCGGGCGTGACGCCGTCGAC 83335 |||||||||||||||||||||||||| |||| ||| | ||| | ||| |||| Sbjct 122 GCGGCGGTCGGCGATGTAGCGGATGTAGCGCTTGACGTCGGTCGCCGTCATGCCCTCGAT 181 Query 83336 CTCGCCCAGGGCGAAGGCTTGGTCGATGAAGGCGTCTTCCAGGTCGACCATCCGGCG-GC 83394 ||||||| ||||||| |||||||||||||||| || | ||||| || | || || Sbjct 182 GCCGCCCAGTTCGAAGGCGAGGTCGATGAAGGCGTCCTCGTGATCGACGATG-GTCGAGC 240 Query 83395 CGGCGTCGTAGAT---GCGCTTCTTGGTCTCGTCGTTCCAGGCGCGCGGGTGCTCCTTGA 83451 |||| | ||||| ||||| | || || ||| ||||| | ||||| ||||| || Sbjct 241 AGGCGACATAGATCTCGCGCTGCA--GT-TCCTCGGTCCAGACTTCCGGGTTCTCCTGGA 297 Query 83452 TCAACTCGTGCAGGAGCTTGATCATGCTCTCGACGTGGTGGGTCTCGTCGCGGATCGACC 83511 | || | | | ||||||| || | | ||| | ||||||||||| | ||||| Sbjct 298 TGAAGGTGCGGAACAGCTTGACGATCGAGTTGCAGTGCAGCGTCTCGTCGCGCACCGACC 357 Query 83512 ACTCGACGATCGTGGTCATGCCCTTCATCAGGCCGCGCCGCTGGTAGTTCATCAGCAGGG 83571 | |||||| | ||||||||||||| | | ||| || |||||||||||| || Sbjct 358 AGGTCACGATCTGGCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATGG 417 Query 83572 CGAACGAGGAGAAAAGCTGCATGCCTTCGCCGAAGGCCGAGAACACGGCGA---TGTCGA 83628 |||| || ||| ||||||| ||| ||| |||||| ||||||||| | | | | Sbjct 418 CGAAGCTGGCGAACAGCTGCAGGCCCTCGGTGAAGGCGCCGAACACGGCCAGCGTCTTGG 477 Query 83629 CGATCAGGTCGGCGATCGACGTGCCGCTCTCGCGCTCGAACATGTACTCGTGCTTTTCAC 83688 |||| |||||| |||| | || | || || |||||| |||| ||| || Sbjct 478 CGAT---GTCGGCCTTCGAGTCGACGTTGAAGCCCT---GCATGTAGTCGTACTTGTCCT 531 Query 83689 GCATCGCC-TGATAGTCCAGGAAGGCGCGGAACTCGACCTCGGGCAGGCCCAGGGTGTCG 83747 |||| || ||| || |||||| || | ||||| |||||||| ||| | |||||| Sbjct 532 TCATCTCCTTGACGGT-GAGGAAGACGGAGTACTCGGTCTCGGGCATGCCGATCGTGTCG 590 Query 83748 ATCAGGGTGGC-GTAGGCGNNNNNNNNNNNNNNNTCGGCCGCCATGAACGAGGCCAGCAT 83806 | || |||||| ||||||| || |||| ||| | ||||||||| Sbjct 591 AGCA-GGTGGCTGTAGGCGGCAACGTGCACCGTCTCCATCGCCGAGAAGGCGGCCAGCAT 649 Query 83807 CATCCGCACCTCCGGGTGCGGGAAGCGCGGGCCGTACTTTTCGAAGTAGCCGCGCGCCAC 83866 |||| |||| || | || |||| | || || | | ||||| | ||| Sbjct 650 CATCTGCACTTCGGTCGGCTTGAAGACCCGGGAATAGTGCCGCATGTAGCAGTTGTTCAC 709 Query 83867 ATCGACGTCGGCCTGGGTGAAGAAGCGGAAGAGTTGCGTAAGCTGGTTCTTCTCGCTG 83924 ||||| ||||||||||||||||||||||||| ||||| ||| ||| ||||||| Sbjct 710 CTCGACATCGGCCTGGGTGAAGAAGCGGAAGATCTGCGTCAGCAGGTGGCGCTCGCTG 767 >seq11046 Length=996 Score = 196 bits (216), Expect = 7e-45 Identities = 368/537 (69%), Gaps = 12/537 (2%) Strand=Plus/Minus Query 84649 GAACGAACCCGAGAGGGTCTTGTGCAGGAAGGTGTTGGC-GCGGTTGGGCTCGATCGACG 84707 ||| || ||||| ||||||||||| | || |||||| || | || |||||| | Sbjct 707 GAAGGAGCCCGACAGGGTCTTGTGGTTGTAGACGTTGGCCGCCGACGG-CTCGATGCCGG 649 Query 84708 GCGAAGCGCCGCCGCAGAGGATCGACGAGGAGGCGTTGGGGGCCACCGCCAGCTTGTGGG 84767 |||| ||||||||||||| |||||| || ||| | || || | ||| ||||||| || Sbjct 648 GCGAGGCGCCGCCGCAGATGATCGAGATCGACGCGGTCGGCGCGATCGCGAGCTTGTTGG 589 Query 84768 CGAAGCGCTC------GCCCGAGCCTTCCATGTCAGGGGCCTCGCCGCGCTCGGCGCCCA 84821 |||||| || ||| | | || || ||| | ||||||| || ||| | Sbjct 588 AGAAGCGGTCCTGGAAGCCGAAATCGGCCGCATCCGGGCACGCGCCGCGTTCCTTGCCGA 529 Query 84822 GGACCAGCGACGCCGCGTCGGCCTTGCGGCGCATGTGGCGGAAGATGGTCTTATTGAGCG 84881 | || ||||||| ||||| || | ||| ||||| ||| || |||| || | Sbjct 528 GCGTCATCGACGCCTCGTCGCACTGACCGCGGATGTGCTTGAACATCTTCTTGTTCCACA 469 Query 84882 TCTCGGCCGCCATGCTCTCGAACGGGATGTCGAGCGACTGGAGCAGCGAGTGGAAGCCCA 84941 || |||| || | |||| ||| ||| || ||| || | ||||||||||||| Sbjct 468 CCTTGGCCATCACGGATTCGAGCGGAATGCCGTTGCCCTGCAGGAAGGAGTGGAAGCCCA 409 Query 84942 GCAGGCCCAGGCCCACCGAGCGCTCGCGCACGGCGCTGTAGGAGGCCCGGTGCATCTCGT 85001 | ||| ||||| |||||||||||||||| ||| |||| || || | ||| Sbjct 408 TGACGCCGAGGCCGACCGAGCGCTCGCGCATCGCGGCATAGGTCGCGCGCGCGAAGTCGG 349 Query 85002 --CCGGCGCGTTGTCGATGAACACCTGGAGGCAGTTGTCCAGCATGCGCATCAGGTCTTC 85059 |||||| |||||||||| ||| || |||||| || | |||||||| ||| || Sbjct 348 AGCCGGCGG--TGTCGATGAAGCTCTGCAGCACGTTGTCGAGGAAGCGCATCACGTCCTC 291 Query 85060 GATGAAGGTCGGGTGATCCTTCCATTCGACCCACTTTTCGGCGTTGACGCTCGACAGGCA 85119 |||||||||||| || || | |||||||| | | ||| |||| ||||||||| Sbjct 290 GATGAAGGTCGGATGCTCGTGCCATTCGAGATAGGTCTCGAGATTGAGCGACGACAGGCA 231 Query 85120 GCAGACGGCCGTGCGCATCTTGCCGAACACGTCGCGGCCGGTGCCCAGCATGATCTC 85176 ||| ||||| |||||| ||||||| |||| |||||| |||| ||||||| Sbjct 230 GCACACGGCGGTGCGCTGCTTGCCGTGATGGTCGATGCCGGTCGGCAGCGTGATCTC 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715321401715200