Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq30120 212 9e-50 seq11046 165 1e-35 >seq30120 Length=782 Score = 212 bits (234), Expect = 9e-50 Identities = 400/576 (69%), Gaps = 23/576 (4%) Strand=Plus/Plus Query 83374 CGAAGGCCTGATCGATGAACGCGTCTTCGAGGTCGACCATGGCGCGGCAGGCGTCATAGA 83433 ||||||| | |||||||| ||||| ||| | ||||| |||| ||||||| |||||| Sbjct 193 CGAAGGCGAGGTCGATGAAGGCGTCCTCGTGATCGACGATGGTCGAGCAGGCGACATAGA 252 Query 83434 T---GCGCTTCTTGGTCTCGTCGTTCCAGGAGCGCGGGTGCTCCTTGATCAACTCGTGCA 83490 | ||||| | || || ||| ||||| ||||| ||||| ||| || | | | Sbjct 253 TCTCGCGCTGCA--GT-TCCTCGGTCCAGACTTCCGGGTTCTCCTGGATGAAGGTGCGGA 309 Query 83491 GGAGCTTGATCATCGACTCCACGTGATGGCTCTCGTCGCGGATCGACCACTCGACGATCG 83550 ||||||| ||||| | ||| | |||||||||| | |||||| |||||| Sbjct 310 ACAGCTTGACGATCGAGTTGCAGTGCAGCGTCTCGTCGCGCACCGACCAGGTCACGATCT 369 Query 83551 TGGTCATGCCCTTCATGCGGTTGCGGCGCTGGAAGGACATCAGCAGGGCGAAGGACGAGA 83610 | |||||||||||| |||| |||| ||||| |||||||| ||||||| | || Sbjct 370 GGCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTTCATCAGCATGGCGAAGCTGGCGA 429 Query 83611 AAAGCTGCATCCCCTCGCCGAAGGCCGAGAACACGGCGA---TGTCGACCATCAGGTCGG 83667 | ||||||| |||||| |||||| ||||||||| | | | | | || ||||| Sbjct 430 ACAGCTGCAGGCCCTCGGTGAAGGCGCCGAACACGGCCAGCGTCTTGGCGAT---GTCGG 486 Query 83668 CGATCGAGTTGCCGCTG--TCCCGATTGAACATGTACTCGTGCTTCTCGCGCATCGCCTC 83725 | |||||| | || || ||| || |||||| |||| ||| || |||| ||| Sbjct 487 CCTTCGAGTCGACGTTGAAGCCC---TG--CATGTAGTCGTACTTGTCCTTCATCTCCTT 541 Query 83726 GTAGTCGAGGAAGGCGCGGAACTCGACCTCGGGCAGGCCCAGGGTGTCGATCAGCGTCG- 83784 | | ||||||| || | ||||| |||||||| ||| | ||||||| ||| || | Sbjct 542 GACGGTGAGGAAGACGGAGTACTCGGTCTCGGGCATGCCGATCGTGTCGAGCAG-GTGGC 600 Query 83785 AGTAGGCGTCGATGTGGTTGGCCT-CGGCGGCGATGAACGCGCCCAGCATCATCCGCACT 83843 ||||||| | | ||| | || | || ||| ||| ||| ||||||||||| ||||| Sbjct 601 TGTAGGCGGCAACGTGCACCGTCTCCATCGCCGA-GAAGGCGGCCAGCATCATCTGCACT 659 Query 83844 TCCGGGTGCGGGAAGCGCGGGCCGTACTTCTCGAAGTAGCCGCGCGCCACGTCGACGTCG 83903 || | || |||| | || || | | | ||||| | ||| ||||| ||| Sbjct 660 TCGGTCGGCTTGAAGACCCGGGAATAGTGCCGCATGTAGCAGTTGTTCACCTCGACATCG 719 Query 83904 GCCTGGGTGAAGAACCGGAAGAGTTGCGTCAGCAGG 83939 |||||||||||||| ||||||| |||||||||||| Sbjct 720 GCCTGGGTGAAGAAGCGGAAGATCTGCGTCAGCAGG 755 Score = 102 bits (112), Expect = 1e-16 Identities = 135/183 (74%), Gaps = 11/183 (6%) Strand=Plus/Plus Query 83115 TCCGTCGAGCGCTGCTCGAAGAAGTTGGTGTGGGTCGG-GGCGTTCATGATCCAGTCGAG 83173 || |||||||| | |||||||||||||||||| ||| ||||||||| ||| ||| | Sbjct 3 TCGGTCGAGCGGTTCTCGAAGAAGTTGGTGTGC-TCGATGGCGTTCATCATCTGGTCCAT 61 Query 83174 CCAGTCGAACGGATTGTCCTTGACG-CCG-----TAGTTGGGCTTCAGGCCCAGTTGCAG 83227 ||| | ||| || |||| || ||| ||| |||||| ||||| || || Sbjct 62 CCACGGCAGCGGGTT---CTTGGCGTCCGCGCGATAGATGGGCTGCAGGCTGAGCTGGGT 118 Query 83228 CAGCCGGCGGTCGGCGATGTAGCGGATGTACTGCTTGGTGTCCTCGGGCGTGACGCCCTC 83287 ||| |||||||||||||||||||||||||| ||||| ||| | ||| | |||||| Sbjct 119 CAGGCGGCGGTCGGCGATGTAGCGGATGTAGCGCTTGACGTCGGTCGCCGTCATGCCCTC 178 Query 83288 GAT 83290 ||| Sbjct 179 GAT 181 >seq11046 Length=996 Score = 165 bits (182), Expect = 1e-35 Identities = 364/539 (68%), Gaps = 14/539 (3%) Strand=Plus/Minus Query 84675 CGAACGAGCCCGACAGGGTCTTGTGCAGGAAGGTGTTGGCCGGGATCGGCTCGATCGACG 84734 |||| |||||||||||||||||||| | || |||||||| ||||||||| | Sbjct 708 CGAAGGAGCCCGACAGGGTCTTGTGGTTGTAGACGTTGGCCGCCGACGGCTCGATGCCGG 649 Query 84735 GCGAGGTGCCCCCGCAGAGGATCGAGGACGAGGCGTTGGGCGCCACGGCCAGCTTGTGGG 84794 |||||| ||| ||||||| ||||||| ||| ||| | ||||| | || ||||||| || Sbjct 648 GCGAGGCGCCGCCGCAGATGATCGAGATCGACGCGGTCGGCGCGATCGCGAGCTTGTTGG 589 Query 84795 CGAACCGCTC------GCCCGTGCCTTCCATGTCCGGCGCCTCGCCGCGCTCCTTGCCCA 84848 ||| || || ||| | || ||||| | ||||||| |||||||| | Sbjct 588 AGAAGCGGTCCTGGAAGCCGAAATCGGCCGCATCCGGGCACGCGCCGCGTTCCTTGCCGA 529 Query 84849 GCAGCAGGGAAGCCGCGTCGGCCTGCTTGCGCATGTGGACGAACAGTTCCAGGTTCAGC- 84907 || || || ||| ||||| ||| ||| ||||| ||||| | | |||| | Sbjct 528 GCGTCATCGACGCCTCGTCGCACTGACCGCGGATGTGCTTGAACATCTTCTTGTTCCACA 469 Query 84908 CGGCGGGCGGCGTGACTCTCGAACGGGATGTCCAGCATCTGGAGCAGCGAGTGGAAGCCG 84967 | || | | | | |||| ||| ||| | ||| || | ||||||||||| Sbjct 468 CCTTGGCCATCACGGAT-TCGAGCGGAATGCCGTTGCCCTGCAGGAAGGAGTGGAAGCCC 410 Query 84968 AGCAGGCCCAGGCCCACCGACCGTTCGCGCACGGCGCTGTAGGCGGCGCGGTGCATCTCG 85027 | | ||| ||||| ||||| || ||||||| ||| |||| ||||| | ||| Sbjct 409 ATGACGCCGAGGCCGACCGAGCGCTCGCGCATCGCGGCATAGGTCGCGCGCGCGAAGTCG 350 Query 85028 T--CCGGCGCGTTGTCGATGAACACCTGGAGGCAGTTGTCCAGCATGCGCAGCAGGTCTT 85085 |||||| |||||||||| ||| || |||||| || | ||||| || ||| | Sbjct 349 GAGCCGGCGG--TGTCGATGAAGCTCTGCAGCACGTTGTCGAGGAAGCGCATCACGTCCT 292 Query 85086 CGATGAAGGTCGGGTGATCCCGCCACTCCGGCCACTTCTCGGCGTTGACGCTGGAGAGGC 85145 ||||||||||||| || || |||| || | | ||||| |||| || |||| Sbjct 291 CGATGAAGGTCGGATGCTCGTGCCATTCGAGATAGGTCTCGAGATTGAGCGACGACAGGC 232 Query 85146 AGCAGACGGCGGTCCGCATCTTGCCGAAGAT-GTCGCGGCCCGAGCCCAGCATGATCTC 85203 |||| |||||||| ||| ||||||| ||| |||| ||| | |||| ||||||| Sbjct 231 AGCACACGGCGGTGCGCTGCTTGCCG-TGATGGTCGATGCCGGTCGGCAGCGTGATCTC 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709270846940320