Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7650 86.0 1e-11 seq146 86.0 1e-11 >seq7650 Length=7814 Score = 86.0 bits (94), Expect = 1e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 213780 GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACC 213839 |||||||| || ||||| | || ||| | | || | | |||||||||||| || ||| Sbjct 3280 GGACACATTAGACTCCATTTGCCATCACTTTTCACACGTTCCATGAACAGGTCGGGAACC 3339 Query 213840 CACAGCGCGGTGAACAGGTCCCTGG-TCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAG 213898 |||| | ||||| || || | || | || || || | ||| |||||| ||||| Sbjct 3340 CACAATCCAAGGAACAAATCTCTTGCTCTTTCT-TCCTCTGCACCATGGTTTTTTCGCAG 3398 Query 213899 ATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949 || | ||| ||||| |||||||||||||| || |||| || || ||||| Sbjct 3399 CTCCAAAAATTCAAAAATGTCCGCGTGCCAAGGTTCCAAATAAATTGCAAA 3449 >seq146 Length=10098 Score = 86.0 bits (94), Expect = 1e-11 Identities = 179/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 213296 GAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTT 213355 ||||||||| |||| ||||| || || ||||| || |||| |||| ||| || ||| Sbjct 8996 GAACACATCGGCCAAGCCCTGCACACCAATGCCAATTGGTCGGTGTTTCAAATTGGACAC 9055 Query 213356 GGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGC 213415 | ||| | || ||| |||||||| ||| || | ||||| | ||| || | Sbjct 9056 CTCGGCCTCTTTCACGGGATAAAAGTTCACGTCAATCACTTTGTTCAAGTTCTTTGTCAC 9115 Query 213416 CACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAA 213475 |||||||| || | | |||| | ||| | |||| | | | | | |||||| Sbjct 9116 TACTTTGGTCACTTCGACCAGTTTCTCCAAGTCGAACTTGCGACTCTTTGCATCCACAAA 9175 Query 213476 CTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC--CTGAGAGTCTGTGTAC 213533 | |||||| || || |||| |||||| || || || || ||| ||| ||||||| Sbjct 9176 TTTAGGCAGAGCAATCGACGCCAAGTTGCACACCGCGACTTCGTCTG-GAGA-TGTGTAC 9233 Query 213534 TCCATGATCTCGGTGCACAGGTT 213556 |||| ||||||||||||| ||| Sbjct 9234 TCCACTATCTCGGTGCACAAGTT 9256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930941171874560