Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq18412 127 6e-25 seq11106 114 4e-21 >seq18412 Length=7087 Score = 127 bits (140), Expect = 6e-25 Identities = 239/346 (69%), Gaps = 13/346 (4%) Strand=Plus/Minus Query 1740 ATTCCACTATGCCCATCCCCATGCAGAATCATATTCATTTTTGCGAGTTTTGCATTTGAG 1799 || ||| ||| ||||| ||||||| |||||||||||| || || | | || | | Sbjct 3508 ATCCCAGCATGACCATCTCCATGCAAAATCATATTCATCTTCGCTATTCGGGCTGTCGCT 3449 Query 1800 GTAATTTCTCTTCCAAAAATAGTATTATG-TTTAAGCTTGATTTCTTCACTACTATTGTT 1858 || | |||||||| | || || | || ||||| ||| | | || || | | Sbjct 3448 GTTACCTCTCTTCCGTATATTGTCTCTTGCTTTAATCTTTTTAAGT---CTTCTTCTCCT 3392 Query 1859 TGCAATTAAAGTGTTATCTTTTATATGATCAAATGCCTCTGTTAAAAAACCACCTGTCCC 1918 | |||||| | |||| || || |||| || ||| || |||||||| || ||||| || Sbjct 3391 T-CAATTATATTGTTCTCCTTAATATAATTAAAGCTTTCGGTTAAAAATCCTCCTGTTCC 3333 Query 1919 ACAAAAAGGGTCATAGA---TCT-TTTCACCATATTTAGGGTTGACTAAGTTAACAATGG 1974 |||||| |||||||| | ||| ||| | |||| || | ||||| |||| || | Sbjct 3332 ACAAAATGGGTCATATACAGTCTCTTTGA----ATTTTGGATCAACTAAATTAATTATTG 3277 Query 1975 TTTTAGTTATGTGACGTGGAGTAAAATATTCTCCTAAGTCATTATTAGTTGCTGTAGCTT 2034 | || || | || |||||||||||||||||||| || || | || | || | | Sbjct 3276 TCTTTACTACATTGCGCGGAGTAAAATATTCTCCTAAATCGTTCTCTGTCGAGGTCGTCT 3217 Query 2035 GCTGTAAGAAATACTCAAAAGCATCTCCTTTAATATCGGTATCTAT 2080 | ||| || || ||||| |||||||||||||||||| | ||||| Sbjct 3216 TTTCTAAAAAGTATTCAAATGCATCTCCTTTAATATCGCTGTCTAT 3171 >seq11106 Length=6059 Score = 114 bits (126), Expect = 4e-21 Identities = 223/322 (69%), Gaps = 28/322 (9%) Strand=Plus/Plus Query 1766 AATCATATTCATTTTTGCGAGTTTTGCAT-TTGAGGTAATTTCTCTTCCAAAAATAGTAT 1824 |||||||||||||||||| | || | || ||| | || ||| | ||||||| ||| | Sbjct 4716 AATCATATTCATTTTTGCAA-TTCTAAATATTGTTGAAAATTCACCGCCAAAAACAGTTT 4774 Query 1825 TATGTTTAAGCTTGATTTCTTCACTACTATTGT--TTGCAATTAAAG----TGTTATCTT 1878 || ||| | || |||| ||||| ||| | |||| | | || | || Sbjct 4775 CATTTTTTAA----ATATCTT-------ATTGTATTTGGATTTAATGGCATTCTTCT-TT 4822 Query 1879 TTATATGATCAAATGCCTCTGTTAAAAAACCACCTGTCCCACAAAAAGGGTCATAGATCT 1938 |||||| | ||| | || || || | ||||| || ||||||||| ||||| || | Sbjct 4823 TTATATATTTAAAAGATTCGGTCAACATTCCACCAGTTCCACAAAAACCATCATATATTT 4882 Query 1939 TTTCACCATATTTAGGGTTGACTAAGTTAACAATGGTTTTAGTTATGTGACGTGGAGTAA 1998 |||| ||| | ||||| || | ||| || || || ||||| || || ||||| |||| Sbjct 4883 TTTCGCCAAACTTAGGATTTAATAATTTCACCATTGTTTTTACAATATGCCGTGGCGTAA 4942 Query 1999 AATATTCTCCTAAGTCATTATTAGTTGCTGTAGC----TTGCTGTAAGAAATACTCAAAA 2054 |||||||||| |||||| | | ||| | | || || ||| ||||||||||| Sbjct 4943 AATATTCTCCAAAGTCAGTTT---CTGCCCCACCATAATTTCT-TAAAAAATACTCAAAG 4998 Query 2055 GCATCTCCTTTAATATCGGTAT 2076 ||||| ||||||||||| |||| Sbjct 4999 GCATCCCCTTTAATATCTGTAT 5020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144955687188108