Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_019923.1 Length=42689 Score E Sequences producing significant alignments: (Bits) Value seq16859 122 2e-23 seq14392 82.4 2e-11 >seq16859 Length=703 Score = 122 bits (134), Expect = 2e-23 Identities = 197/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 6120 GTCGGCGGCGCAG-CCACCAAGGACAACGTGATCGACGCTGGCGGTACCGGCACCGACAA 6178 |||| || ||||| || |||| |||| | |||| | |||||| | ||| ||||||| Sbjct 461 GTCGACGTCGCAGACCGCCAA---CAACTTCATCGCGGGCGGCGGTTCGGGCTCCGACAA 405 Query 6179 CTCGTCCATCTGGCTGATCGGCTGGGGCGCCAACACCATCCACGGCATCTACCCGAAAGG 6238 | |||| ||||||||| |||||||||||| ||| | |||||||||| ||| || || Sbjct 404 CACGTCGATCTGGCTGGTCGGCTGGGGCGATCTTACCGTGCACGGCATCTTCCCCAAGGG 345 Query 6239 CTCGCAGGCAGGCCTGATCCA-CAACGACCTAGGCGAGATTGACGC-GTTCGATGCCAGC 6296 | |||| || ||| || | || ||||| |||||| ||||| | |||| || | Sbjct 344 CAGCAAGGCCGGGCTG-TCGATGAAAGACCTCGGCGAG-CAGACGCTGCTCGACGCGGCC 287 Query 6297 ATGAACCGCTTCCGCGCCTACGGCGACCAGTACCAATGGAAGGCCGGTATTGCCGTGCAC 6356 || |||| || | |||| || ||| ||| | ||| | ||||| | | |||| | Sbjct 286 GGCAATCGCTACCAGGGCTACCGCACCCACTACAAGTGGGACGCCGGCCTCACGGTGCGC 227 Query 6357 GACTGGCGCTACGCCGTTCGTATCGCAAACATCGAC 6392 || |||||||| | ||| || |||| ||||||||| Sbjct 226 GATTGGCGCTATGTCGTGCGCATCGGCAACATCGAC 191 >seq14392 Length=807 Score = 82.4 bits (90), Expect = 2e-11 Identities = 95/127 (75%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 919 GACACCCGCGTCGTCGTGACGGCCAACACCGAAACACAGCTGCGCACCAAGACCTGGCCG 978 ||||| |||| | |||||||||||||||| | || ||||| | ||||| |||||||| Sbjct 654 GACACGCGCGGCATCGTGACGGCCAACACGGCGACGCAGCTCAGGACCAAAACCTGGCCC 713 Query 979 GAGATTGCCAAATGGCGCCGGCTCAGCCTGTTCTCGCACTGGTTCAAGACCACGGCCACA 1038 || | |||||||| |||||| ||| | || ||||||||| ||| ||||||| Sbjct 714 GAACTCACCAAATGGTTGCGGCTC-GCCGCCTGTCCCACTGGTTCGAGATATCGGCCACG 772 Query 1039 TCGATCG 1045 | |||| Sbjct 773 GCTATCG 779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136400851922958