Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulomyxa_20filosa_20[genbank_20GCA_5F000512085.1_202013-12-30] 50,809 sequences; 101,867,045 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq19824 89.7 4e-13 seq49792 82.4 6e-11 >seq19824 Length=8713 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| || || || ||||||||||| || |||||| Sbjct 6559 ATGCAAATCTTTGTTAAAACCTTGACCGGAAAAACCATTACGTTGGACGTGGAACCCAAC 6500 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | || ||||| |||||| ||||| || || | || || ||| Sbjct 6499 GACACCATCCAAAATGTCAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGAGCAA 6440 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || |||||||| ||||||||||| || ||| | |||| || ||| || ||| Sbjct 6439 CAACGTCTCATCTTTGCCGGCAAACAATTAGAGGATGGAAGAACTTTGAGCGACTACAAC 6380 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || ||||||||| ||| |||| ||||||| Sbjct 6379 ATCCAAAAAGAAAGTACCTTGCATTTGGTATT 6348 >seq49792 Length=5355 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| ||||| || || | || ||| ||||| |||| |||||||| || || Sbjct 626 AAAATCCAGGACAAGGAAGGCATTCCTCCAGAGCAACAACGACTGATCTTTGCCGGAAAG 685 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 |||||||||||| | || || |||||||||||| ||||||||| || |||| Sbjct 686 CAATTGGAAGATGGAAGGACCTTGAGCGATTATAACATCCAAAAAGAAAGCACATTGCAT 745 Query 28758 ATGGTATTAAGATTACGAGGAGG 28780 ||||||| | |||||||| || Sbjct 746 TTGGTATTGCGTTTACGAGGTGG 768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425141374591611